Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1435 ATGAATCGTCTAAAGGCTATTGTTGCTAACCTCAGATTCCTCGAGTCGCCACTCGCCGGCCGAGTCATTGCAACTCGGTTTCTCCAACTTGCTCGGAACCAGGTGActcatttctctctctacactccATCTCCCCTTTTGGATCGCTCTCATGAGTTTTGCTTTCCCAACATTCATCAGAAACTCTACTTTTCTTCGAAACCAAACCCCATTGTGGAGCTTGTTTTGACCAGCGATTGGTCCAAGGGGTTAGAGCACGAGTTAGAAAAATGCTGCTCATCCATGACCCATGAAACTGTTGTTTACGTTTTGAAGCGGTTGGAAGGAAACCCAGAAAAAGCTTGGTGTTTTTTCAATTGGGTCAGTACGAAAGAATGGTTTAGAGCAAGTTCGTCACTGTATAGCTTAATTGTTAGGGTCTTGGTCAGTGTGGAGACGATAAAACAATTTTGGATTACTCTATGGACTATGAAGAGAAAAGGgttttattttgatgaagaGATTTATCTTCCAATTCTAGCTGATTTTAGAAGGAAAAAGATGAACAAGTATTGCGCGTCTCTTACCCGCTTCTATAATCGGAGTATTCAGGAAAATGCAATGCAAAGTGTTGTCACCAAGGTGGTTGATATCATTTCAGGGTCTAAATGGGGTGATGAGGTTATGGGTGAACTTGCAAAGCTTAAAATTCAGCTGTCGGATAATTTTGTAACAAGGGTTTTGAAAGAGCTTCGAAATTGTCCTTTAAAGGCTTTAGAGTTCTTTCACTGGGTCGAGAAGCAGTCTGATTATGAGCATAACACAGTGACTTACAATGCAATTGCAAGAGTTCTCGGGAGGGCTGACTCAATTGAGGAGTTTTGGAGTGTTATTGAGGAGATGAAGAGCGAGGGTCATGAATTGGATATTGATacttacataaaaatatcaaggaTGCTTCAAAAGAATAGGATGATGGAGGATGCTGTCAACCTTTATGAGCTTATGATGGATGGTTCATGTAAGCCATTGGTTCAGGATTGCAGCCTTCTTTTGAAAAGCATCTCTGCAAGTGATCGGCCAAATTTGGATTTAGTTTTCAGGGTTGTTAAGAAATTCGAGTCTACAGGGCACATTCTCTCCAAGGCAATCTATGATGGAATCCACAGGTCTTTGACTGGTGCTGGGAAACTTGATGAAGCTGAAAATATTGTTAGGACTATGAGAAGTGCTGGCCATGAGCCTGATAACATCACCTACAGTCAAGTGGTTTTTGGACTTTGTAAGATGAGGAGGTTTGAAGAAGCATGTAAAGTGCTGGAGGAGATGGAATCTTGTGGATGCATCCCTGATATTAAGACTTGGACCATCTTGATCCAAGGGCATTGTGATGCCAATGAAGTAGATAAAGCATTACTTTGTTTTACTAAGATGATTGAAAAGGGCTGCGATCCAGATGCAGCTGTTTTAGGTGTTCTGATCGACAGTTTTCTTAATCAAAAGAGAATAGATGATGCTTACAAGTTGCTTGTAGAGATTGTTAGAAAGCATGGCACATCTCCGTGGTTCAATACATATAAGAAACTGATTGAAAACCTATTGGGAATTGAGAAATTTGAGGAGGCACTTGACCTTCTTTGTTTGATGAGGAAACACAGATACACTCCATGCACTAAACCCTTTGTGCGGTATATTTCCAAGTTTGGGTCTATAGAAGATGCTATAAAATTCCTGAAGGAATGGAGTAAGGGAAGTCCGCAGTCCCATTCGGCCTACCTTcatgtttttaaatctttaCTCGGAGAAGGTAGATTCTCTGAGGCCAAAGATCTATTGAGCAAGATACGTCGCCATATAAGTAAACGTAAACAAATCACTGAACTCTTTGATTCAGTGGAGAATTGCACGGTGCAAAGCCTCGGTTGTATCAGCCAGTAA 1917 0.3991 MNRLKAIVANLRFLESPLAGRVIATRFLQLARNQVTHFSLYTPSPLLDRSHEFCFPNIHQKLYFSSKPNPIVELVLTSDWSKGLEHELEKCCSSMTHETVVYVLKRLEGNPEKAWCFFNWVSTKEWFRASSSLYSLIVRVLVSVETIKQFWITLWTMKRKGFYFDEEIYLPILADFRRKKMNKYCASLTRFYNRSIQENAMQSVVTKVVDIISGSKWGDEVMGELAKLKIQLSDNFVTRVLKELRNCPLKALEFFHWVEKQSDYEHNTVTYNAIARVLGRADSIEEFWSVIEEMKSEGHELDIDTYIKISRMLQKNRMMEDAVNLYELMMDGSCKPLVQDCSLLLKSISASDRPNLDLVFRVVKKFESTGHILSKAIYDGIHRSLTGAGKLDEAENIVRTMRSAGHEPDNITYSQVVFGLCKMRRFEEACKVLEEMESCGCIPDIKTWTILIQGHCDANEVDKALLCFTKMIEKGCDPDAAVLGVLIDSFLNQKRIDDAYKLLVEIVRKHGTSPWFNTYKKLIENLLGIEKFEEALDLLCLMRKHRYTPCTKPFVRYISKFGSIEDAIKFLKEWSKGSPQSHSAYLHVFKSLLGEGRFSEAKDLLSKIRRHISKRKQITELFDSVENCTVQSLGCISQ 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1435 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Ssu6g1435 638 PANTHER OS01G0970900 PROTEIN 1 625 - -
Ssu6g1435 638 PANTHER OS01G0970900 PROTEIN 1 625 IPR044578 GO:0008380
Ssu6g1435 638 SUPERFAMILY TPR-like 419 609 IPR011990 GO:0005515
Ssu6g1435 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Ssu6g1435 638 Pfam PPR repeat 269 298 IPR002885 -
Ssu6g1435 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Ssu6g1435 638 Gene3D Tetratricopeptide repeat domain 227 357 IPR011990 GO:0005515
Ssu6g1435 638 Pfam PPR repeat family 419 456 IPR002885 -
Ssu6g1435 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Ssu6g1435 638 Gene3D Tetratricopeptide repeat domain 373 514 IPR011990 GO:0005515
Ssu6g1435 638 TIGRFAM PPR: pentatricopeptide repeat domain 411 445 IPR002885 -
Ssu6g1435 638 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Ssu6g1435 638 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Ssu6g1435 638 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1435 Ssu-Chr6 23481496 23483412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1435 134 622 Glycosyltransferase AT1G05670 22.892 8.81e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1435 - - gmx:100801257 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1435 6 23481496 23483412 Ssu6g1435 6 23481496 23483412 ECH