Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1431 ATGAGGCAGCAATTGAAGTTCTTGAGAATTGATGTACATATGAATGGTGGTGGTAAATCAAATGCTGGGTCTAGTGGAAGTGTCACCCCCTTAAAATCTCCTCCTGTCACAAACCCATTTCAGGTTAGGGATGCTAGAGCTTCATATTCTCTGCCAGAGCCAGTACGTGAGGCTCTTTCCAAGTTATCACTTTCATCTTCAAGTCCTGTGGTTGATAATCTTGCCAATTCAATTTTGGAAATGGGACAATCCGTTCTAAATTCTCATTTCCAGCCTCGTGGTGCAGCTGCTACAAGTTCAAAAACTGGTGTTCCTGAAGAACCTATCACTTCTGAAGCAATAGGTCCACAATCTCCACATGTGGACTCAGCCAACAATGCCAGTGTCCATAGTGATAGTGGCACCCCCTTAAGATCTCCTGTTACAAACCCATCTCTGAGTGGAAATGCTGTTAAAGCTGACATCATTAGTTCTGCGCCTGAGCCAGTACGCAAGTTTTTGTCCAATTTATCACGTTCAAATGCTGCATCTTCAAGTCAGCTGCCTGTTAATCTCACTGATTTAATTTCCCTAGTGGGACAATCTGTTCTGGATTCGTATTGCCAGCCTCATGTCACAGCTGGTCCATTCTCAAAAAATGGTGTTCCTGAAGAACCTATCACCTCTGAAGCAAGAGGTCCACAGATTCCATCTGTATACTTGGCTTCCAATGCCACGCAACAGGTGGAGGCTGAAAATGTAATCCCTCAACATGTGGAGGCTGGAAACGTATCCAGAGGTGTAGTCTCTACTTCCAATTCCAGTCAACAGGTGGAGGCTGGGAACGTAATTAGAAGTGTAACGACAGCGGCAGGAGTTGCCGCTGTTGATCTCAATATCCCACCATGTGATCCCCATTCATCTCAGTCCATAAATGTAAATAAGGCTCCTCTTTCATCAGTCCCTGATGGTGATGGCAAGAAGGGTAAAATGTCAACTGTCGATAGTTTTGCTGGTGAGGGTGTCAGTAGTGGGACACCCTCAAGTTCTGCAGGTCCTAGTAACAGTTCAACCCAGACTACCTCGTTGAGTTCTGGTGCTTTCATTGACTGTCCATTTTCTGGGACTTATACCATTAATTCTTGGACACCACCACCTCTTGGAAACTCTCTAATACCCCCATTTAAAAGGAGCCATAGTCACACTGAGGCAATGACTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCCTAGTAAAGGAAAATTATGACCTCTGCAACATTTGTTTCAATGAAATGGGTAATGGGACAGATTATATCAGAATGGACCGCCCTGCATCTGCTCGTGCCCCTCAATGCCTATATGAACATACAAAAAACTTTCCAACATTACCACCACCTATTGTTAAGAAAGGTGCATTTTTGAAGTATGCAAGGCCAAAGCTAGATAGTCGGTtcattttggatgtcaatgtgaTTGATGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATGCGCAATAATGGCACTATAGTGTGGCCCACGGGAACTCAACTTGTTTGGATTggaggagacaagtttagtgaCTTTCATTCAGTTGACTTGGAGGTTCCCGAGGATGGTGTCCCTGTGGAGAAGGAACTTGACATTGCAGTTGATTTCACAGCACCTCAGTTACCTGGTCGATACATATCATACTGGAGGATGTCAACTCCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAGCTCTCAAGGTCTGAACTTGAATATTCCTCTTGATGTCGGTGGCTCTAAAGGACCTCAGGTTATAGATATCAATATTCAGCCCATTGAGGATGATACTTTTCTTCAAACCCGCAATCCTAATGCTCCCATTGAACCTGTGAATCAAATGGGTGATAAGGAACCAAGGTTGGAGGTGGAAAACGAAGTCCCTATAAATGAAGCTACATTTGTTGCCCCTGCTGCCTTAGCCCCTGCAACCTCTGTGGCACCTTCATCAGTTTCTTATCCTATTATTGATTTAAGTGAAACAGCCCCAGCTGTTCCCTCTAATCAGCAATCCTCAACTGTGGAAgtgccatcatcatctctagGGATTGGTGGAACTAATTCTGTGGAGGAGAGTCTACTTAAAGAGCTTGAGGAGATGGGTTTTAAGCATGTTGATTTGAACAAAGAGATCTTGAGGATGAATGAGTACGATCTGGACCAATCACTAGACGATCTCTGTAGTGTTGTTGATCTCTCTGGTGTTTCAGAGTGGGACCCTATCCTTGAAGAGTTACAGGAGATGGGTTTCCGTGACAAAGAGATGAATAAGAGGCTGctgaagaaaaacaatggaagcATCAAACGTGTTGTTATGGATTTAATCAACGGAGAGTag 2469 0.4277 MRQQLKFLRIDVHMNGGGKSNAGSSGSVTPLKSPPVTNPFQVRDARASYSLPEPVREALSKLSLSSSSPVVDNLANSILEMGQSVLNSHFQPRGAAATSSKTGVPEEPITSEAIGPQSPHVDSANNASVHSDSGTPLRSPVTNPSLSGNAVKADIISSAPEPVRKFLSNLSRSNAASSSQLPVNLTDLISLVGQSVLDSYCQPHVTAGPFSKNGVPEEPITSEARGPQIPSVYLASNATQQVEAENVIPQHVEAGNVSRGVVSTSNSSQQVEAGNVIRSVTTAAGVAAVDLNIPPCDPHSSQSINVNKAPLSSVPDGDGKKGKMSTVDSFAGEGVSSGTPSSSAGPSNSSTQTTSLSSGAFIDCPFSGTYTINSWTPPPLGNSLIPPFKRSHSHTEAMTGMFHKGVRCDGCGVYPITGPRFKSLVKENYDLCNICFNEMGNGTDYIRMDRPASARAPQCLYEHTKNFPTLPPPIVKKGAFLKYARPKLDSRFILDVNVIDGTMMAPSTAFTKIWRMRNNGTIVWPTGTQLVWIGGDKFSDFHSVDLEVPEDGVPVEKELDIAVDFTAPQLPGRYISYWRMSTPSGHKFGQRVWVLIQVDASLKDSFYDSSQGLNLNIPLDVGGSKGPQVIDINIQPIEDDTFLQTRNPNAPIEPVNQMGDKEPRLEVENEVPINEATFVAPAALAPATSVAPSSVSYPIIDLSETAPAVPSNQQSSTVEVPSSSLGIGGTNSVEESLLKELEEMGFKHVDLNKEILRMNEYDLDQSLDDLCSVVDLSGVSEWDPILEELQEMGFRDKEMNKRLLKKNNGSIKRVVMDLINGE 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1431 822 CDD UBA_NBR1 781 819 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 91 146 - -
Ssu6g1431 822 SMART zz_5 402 447 IPR000433 GO:0008270
Ssu6g1431 822 Pfam Zinc finger, ZZ type 403 438 IPR000433 GO:0008270
Ssu6g1431 822 Gene3D Immunoglobulins 483 602 IPR013783 -
Ssu6g1431 822 SUPERFAMILY RING/U-box 397 453 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 18 36 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 14 39 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 330 356 - -
Ssu6g1431 822 Gene3D - 395 453 IPR043145 -
Ssu6g1431 822 PANTHER PROTEIN JOKA2 352 822 - -
Ssu6g1431 822 Gene3D - 778 821 - -
Ssu6g1431 822 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 352 822 - -
Ssu6g1431 822 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 104 - -
Ssu6g1431 822 SUPERFAMILY UBA-like 782 820 IPR009060 GO:0005515
Ssu6g1431 822 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 778 821 IPR015940 -
Ssu6g1431 822 CDD NBR1_like 486 599 IPR032350 -
Ssu6g1431 822 Gene3D - 726 777 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 116 146 - -
Ssu6g1431 822 ProSiteProfiles Zinc finger ZZ-type profile. 403 453 IPR000433 GO:0008270
Ssu6g1431 822 MobiDBLite consensus disorder prediction 707 726 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 299 356 - -
Ssu6g1431 822 MobiDBLite consensus disorder prediction 91 106 - -
Ssu6g1431 822 PANTHER PROTEIN JOKA2 1 104 - -
Ssu6g1431 822 Pfam Ig-like domain from next to BRCA1 gene 497 598 IPR032350 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1431 K17987 - gmx:100778692 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1431 6 23468428 23471483 Ssu6g1431 6 23468428 23471483 ECH