Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1426 ATGTCTCCTTCCGTCGCCGGCATGGGGTTAGTGATTCTCCTCCACCTCTCTCTGTTGGCGGCTCCCGCACTTTCCCTGGACTTCCTATTCAACTCCTTCGCCGGCGTGACGAACCTCACTCTCATCAAAGACGCCCGCGTGGACGTGTCCGTGATCCGCATGACCAACGACTCCAACCAGTACTCTTACGGCCGCGCCTTCTACCCCACCAAGGTGCCCATGAAGGCCCCCTCCATCTCTTCCTTCTCCACCTCCTTCGTCTTCTCCATCTTGCCGCAGATCCCCACCAGCCCCGGCTTCGGCCTCGCCTTCCTCCTCTGCAACACCACCGATCCCCCCGGCGCCCTCGCCAGCCAGTACTTCGGCCTCTTCACCAACGCAACCTCCCCCTCCGTCTTCCCCCTCATCGCCGTCGAATTCGACACCGGCCAGAACCCCGAGTTCAACGACATCGACGACAACCACATCGGCATCGACCTCAACAACATCGAATCCACGTTCGCAACCACCGCCGGGTACTACAACTCCTCCGGCGGCTTCGTCCCGGTGCGAATGCGCACCGGCCAAAACATCCGGGCCTGGATCGAGTTCGACGGCGAGAGTCTCCAGTTCAACGTAACGGTCGCGCCAGTCGGCGTTTCGCGCCCCTCGACTCCCACGCTTACTTATCGTCATCCCGCCATAGCCAACTACGTGTCCGCTGACATGTACGTTGGGTTTTCCGCTTCGAAAACGAACTGGATCGAGGCGCAGAGAGTCCTCGCGTGGAGCTTCAGCGACTCAGGACCCGCAAGGGAACTTAACACAACGAACTTACCGGTGTTCGAGCCAGAATCGTCGTCTTCCTCGCTTTCTGGCGGAGCAATAGCAGGAATTGTTATTGGTTGTTTTGTTTTCGTGCTCGTATGTGCCTCTGGTTTTTACCTGTGGTGGCGAAACAACAAAGGGAAAGAGGACGAAGATGAGGAGATCGAAGATTGGGAGTTAGAGTACTGGCCGCATAGATTTTCCTACGAGGAGTTAAGTTCAGCGACAAGGGAGTTTCGGAAGGAGCAGTTGTTGGGTTCGGGAGGGTTCGGGAGAGTGTACAGAGGGACGTTACCGAACAACACGCAAATTGCGGTGAAGTGCGTGAACCACGATTCCAAGCAGGGTTGCGGGAGTTCATGGCGGAGATATCCAGCATGGGGAGGCTGCAGCACAAGCACTTGGTCCAAATGCGAGGGTGGTGTAGAAAGGGGAACGAGCTTCTGTTGGTTTATGATTTCATGCCCAATGGGAGTCTCAACAAGTGGGTGTTCGACCGCCCCGAGAAGCTTCTCGGGTGGGAGCGACGGCGTCGTATCCTTGTCGACGTGGCAGAGGGGCTCAACTACCTTCACCACGGTTGGGACCAGGTTGTTATTCACAGGGACATAA 1419 0.5715 MSPSVAGMGLVILLHLSLLAAPALSLDFLFNSFAGVTNLTLIKDARVDVSVIRMTNDSNQYSYGRAFYPTKVPMKAPSISSFSTSFVFSILPQIPTSPGFGLAFLLCNTTDPPGALASQYFGLFTNATSPSVFPLIAVEFDTGQNPEFNDIDDNHIGIDLNNIESTFATTAGYYNSSGGFVPVRMRTGQNIRAWIEFDGESLQFNVTVAPVGVSRPSTPTLTYRHPAIANYVSADMYVGFSASKTNWIEAQRVLAWSFSDSGPARELNTTNLPVFEPESSSSSLSGGAIAGIVIGCFVFVLVCASGFYLWWRNNKGKEDEDEEIEDWELEYWPHRFSYEELSSATREFRKEQLLGSGGFGRVYRGTLPNNTQIAVKCVNHDSKQGCGSSWRRYPAWGGCSTSTWSKCEGGVERGTSFCWFMISCPMGVSTSGCSTAPRSFSGGSDGVVSLSTWQRGSTTFTTVGTRLLFTGT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1426 472 Gene3D - 24 276 - -
Ssu6g1426 472 SUPERFAMILY Protein kinase-like (PK-like) 325 382 IPR011009 -
Ssu6g1426 472 PANTHER - 10 385 - -
Ssu6g1426 472 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Ssu6g1426 472 CDD lectin_legume_LecRK_Arcelin_ConA 26 262 IPR001220 GO:0030246
Ssu6g1426 472 Gene3D Phosphorylase Kinase; domain 1 317 393 - -
Ssu6g1426 472 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Ssu6g1426 472 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 10 385 - -
Ssu6g1426 472 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 275 IPR013320 -
Ssu6g1426 472 Pfam Legume lectin domain 26 272 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1426 Ssu-Chr6 23392077 23393495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1426 25 427 Receptor kinase-like Gene Family AT1G15530 61.017 4.66e-150 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1426 - - gmx:100780660 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1426 6 23392077 23393495 Ssu6g1426 6 23392077 23393495 ECH