Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1424 ATGGCAAGCAGCACCACTTTATTTGCTGCTATTCTAAAATTTCTGATCATTTTCTTATTCGCAGGTTGGGTTTCTCTTTGGCTTCTGAAGCCAACCCAAATATggacaagaaaatggaagcaTGCAGAAGATCGTGCCAATGATACAATTCTTGGGTACTATGGTCTTAGCTTTGCTGTTTACACGTTTCCTATAATAGCTATTGCTATAATTGGACTTCTTTTATTGGATTTAAAAGCTGGATATCAAAGAAGCAgAAGCGCAAGGAgttcatcaaaatcaaatttcttctcaaatccactGGTGGTGAACAGTACACTGGGAATCTTATCCAGTATTGAAATACTGGTGGCTTCCCTTTGTATTGTCTTCTTAGCATGGACCTATTACTCTCGTATTTCTGTAGACTTCAAAAAGTTGATGCCAGACAAATCACTGAACTTGAATATGTGGCAACTCAAGTATCTCAGAATAGCAACCCGGTTTGGCTTACTAGCAGAAGCCAGCCTGGCTTTGCTGCTGCTTCCTATTTTAAGGGGGTTGGCTGTGTTTCGCATACTTGGTATTCAGTTTGAAGCTTCAGTTAGATATCACACCTGGGTCGGAACTGCAATGATACTTTTTGCTACTATACATGGCTCAAGCACTTTGTTGGTCTGGGGGGTCAGCCACCATATACAGCACGAGATTTGGAATTGGCAAAAGACAGGACGCATATACCTCGCTGGGGAGATTGCACTTGTTATCGGGCTAGTTATATGGGTCACTTCACTTCCCCAAATTAGAAGGAGAAAGTTTGAAATCTTCTACTACACACATCATTTGTATGCAGTCTTTCTAgtatttttcttgtttcatGGTGGGGATAGGCACTTTTATACGGTCTTCCCAGGAATATTCCTTTTTAGCCTTGATAAACTGATCCGAGTCATACAATCAAGGCCAAATACTTGCATTGTTTCAGCTAGAATTTTTCCCTGTAAAGCTGTGGAGCTAATTCTGCCCAAAGATCCAgGGCTGAAATATAACCCTACAAGTGTTATATTTTTGAAGATACCGACCATATCTCATCTTCAATGGCACTCTTTCAGTATAATATCAAGTTCCAGGGCTGATGACCACATTTTGTCTGTGATAATTAAATGTGAAGGGTGGTGGACTAATTCTCTTTATGACCTGATACATGCTGAACTAGACAAAACTGCAGATAAAAGGAAGGGGATACCTGTTGCAATCGAAGGACCTTATGGACCTGCTTCATTAGACTTTTTGAGATATGACACCCTTCTTCTGGTTGCCGGAGGAAGTGGAATAACCCCATTTCTGAGCATTTTGGCAGAAGCTGATTCAGCTACCAGCAAAAGTAGATATCCCTCGAGAATACAACTTGTGTATGTCATTAAGAAGGCACAAGACTTCTGCCTGTTACATTCAATCTCACATCTGTTACTCAACCAATCAACtgaaaaaatttgtttgaatcTAAAATTGTTTGTAACCCAAGAAACGCAAGCAGGGGTGGGAATTAGGGAGCTACTAAATGAGTTCTTTGAAGTAAGAACCCTGCAAGTGAACAGCATGTTTTCAAATTATGCAGCATACGGGCCTGAAAGTCCATCTTGGATGGCTGCCATTGCAGGGTTATGCTCCATCATGTTCCTTATTTTCCTTATCTGTTTCAACCATATTATAATTCCATCTGGAAAGCGTTCAAAAATGTCCAGAGAAAAGACTCCCTCTTGGGTTGTGGATCTTCTTCTGATAGTTGCTTTTGTCCTAGCTTTAGCTTGCAGCGCCTCGATGGCAGCTATTTTGAGATGGAGAAGGCTTAGGAAAGGGATTCCACAAGTATCGCATGGAGAAATTAAACCCCTTGATCTAAGTTCAGCTGAAGCTAGGAATGCACTTGAAGAACATGAAGTGCATTTTGGGGGAAGGCCTAACTTTAAAGATATACTTGGCAAGCTCCGGAATGAAAGCGGTGGATCTAATATTGGAGTTTTGGTTTGTGGACCTGAGAGCATGAAGGAATCGGTGGCGTTCGCATGCCAGCAGGAATCCGAGTGTTTTAAGGTTAGCGCAAAGAGAACAGTATCCTGCTTCACTTTCCACACTCTCAACTTCACGCTGTAG 2133 0.4004 MASSTTLFAAILKFLIIFLFAGWVSLWLLKPTQIWTRKWKHAEDRANDTILGYYGLSFAVYTFPIIAIAIIGLLLLDLKAGYQRSRSARSSSKSNFFSNPLVVNSTLGILSSIEILVASLCIVFLAWTYYSRISVDFKKLMPDKSLNLNMWQLKYLRIATRFGLLAEASLALLLLPILRGLAVFRILGIQFEASVRYHTWVGTAMILFATIHGSSTLLVWGVSHHIQHEIWNWQKTGRIYLAGEIALVIGLVIWVTSLPQIRRRKFEIFYYTHHLYAVFLVFFLFHGGDRHFYTVFPGIFLFSLDKLIRVIQSRPNTCIVSARIFPCKAVELILPKDPGLKYNPTSVIFLKIPTISHLQWHSFSIISSSRADDHILSVIIKCEGWWTNSLYDLIHAELDKTADKRKGIPVAIEGPYGPASLDFLRYDTLLLVAGGSGITPFLSILAEADSATSKSRYPSRIQLVYVIKKAQDFCLLHSISHLLLNQSTEKICLNLKLFVTQETQAGVGIRELLNEFFEVRTLQVNSMFSNYAAYGPESPSWMAAIAGLCSIMFLIFLICFNHIIIPSGKRSKMSREKTPSWVVDLLLIVAFVLALACSASMAAILRWRRLRKGIPQVSHGEIKPLDLSSAEARNALEEHEVHFGGRPNFKDILGKLRNESGGSNIGVLVCGPESMKESVAFACQQESECFKVSAKRTVSCFTFHTLNFTL 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1424 710 SUPERFAMILY Riboflavin synthase domain-like 318 418 IPR017938 -
Ssu6g1424 710 SFLD Ferric reductase subgroup (FRE) 8 687 - -
Ssu6g1424 710 Pfam Ferric reductase like transmembrane component 163 283 IPR013130 -
Ssu6g1424 710 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 410 485 IPR039261 -
Ssu6g1424 710 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 297 422 IPR017927 GO:0016491
Ssu6g1424 710 Pfam FAD-binding domain 320 420 IPR013112 GO:0016491
Ssu6g1424 710 SFLD Ferric Reductase Domain 32 687 - -
Ssu6g1424 710 PANTHER NADPH OXIDASE 1 709 - -
Ssu6g1424 710 CDD NOX_Duox_like_FAD_NADP 319 473 - -
Ssu6g1424 710 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 1 709 - -
Ssu6g1424 710 Gene3D - 410 542 IPR039261 -
Ssu6g1424 710 Gene3D - 601 708 IPR039261 -
Ssu6g1424 710 Pfam Ferric reductase NAD binding domain 426 684 IPR013121 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1424 Ssu-Chr6 23387614 23390570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1424 183 710 Miscellaneous Gene Families AT5G50160 49.005 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1424 K00521 - gmx:100816560 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1424 6 23387614 23390570 Ssu6g1424 6 23387614 23390570 ECH