Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1411 ATGGGGGCATGGGGGGCTTTTGTGAGGGACTTGAAGGACGAGTTTAGTGCGTTGGAGTATGTGTATGTGTGGCATGCTTTTTGTGGGTACTGGGGTGGGGTTAGGCCCGACGTGCCGGGGATGCCGGACTCTACGGTGGTTGCCACGAAGTTGTCGCCGGGGGCGGAGATGACTATGACGGATCTGGCGGTGGTGAAGATAATGGAGGTGGGGTGGGGCTGGTGGCGCCGCAAGAGGCGCACGAGTTGTACGAGGGTCTTCACTCGCACCTTGAATCCGCGGGAATTGACGGTTCTAGAGATGCTATCGGAGGAATATGGTGGTCGTGTTGAACTCGCCAAAGCATATTACAAAGCACTCACTGCTTCCGTGAGGAAGCATTTCAAAGGCAATGGTGTCATTTCAAGCATGCAGCAGTGCAATGATTTCATGTTCCTTGGTACGGAAACCATATCACTTGGACGAGTCAATATTCATTCCTTAACTGTGAGTTGTGATACATTCATGCAGGTGATGATTTTTGGTGCACGGACCCCGCTGGAGATCCAAATGGTACCTATTGGCTGCAAGGATGTCACATGGTGCACTGTGCTTACAACAGCTTGTGGATACGAAATTTCATACACAGATTGGGACATGTTCCAATCTGATCATGCTTGTGCCGAATTCCACGCTGCTTCTAGGGCCATCTCTGGTGGACCAATTTATGTAAGCGATTCTGTTGGAAACCACAACTTCCAGTTGCTTAAGAAGCTGGTTCTGCCTGATGGTTCCATTTTGCGGTGTCAACAGTATGCACTTCCTACCCGAGACTGCTTATTTGTAGACACTTTACATGACGGGAAAACAATGCTCAAAATTTGGAACCTCAATAAATGTTCCGGGGATTTGGGTCTGTTCAATTGCCAAGGAGGAGGGTGGTGTCCTGTTACTAGGCGAAACAAGAATGCCTCTGATTTTTCACACTCTGTGACTTGCTTTGCAAGTCCTCAAGACATTGAATGGAGCAAAGGGAAGCACCCAATTTGCATCAAAGGGGTAGATGTATTTGCTGTGTACATGTTTAAGGATGACAAGTTGAAGCTCCTGAAGTACACAGAGAGTGTAGAAGTTTCACTTGAGCCCTTTAGTATTGAGCTGTTGACAGTTTCTCCAGTGGTGGTCTTACCCAGAAAATCAATCCAATTTGCTCCAATTGGATTCGTGAACATGCTCAACTCTGGGGGATCAATTCTGTCAATAGAATTTGATAAACAGGAAAATTTGGGGTGA 1272 0.4748 MGAWGAFVRDLKDEFSALEYVYVWHAFCGYWGGVRPDVPGMPDSTVVATKLSPGAEMTMTDLAVVKIMEVGWGWWRRKRRTSCTRVFTRTLNPRELTVLEMLSEEYGGRVELAKAYYKALTASVRKHFKGNGVISSMQQCNDFMFLGTETISLGRVNIHSLTVSCDTFMQVMIFGARTPLEIQMVPIGCKDVTWCTVLTTACGYEISYTDWDMFQSDHACAEFHAASRAISGGPIYVSDSVGNHNFQLLKKLVLPDGSILRCQQYALPTRDCLFVDTLHDGKTMLKIWNLNKCSGDLGLFNCQGGGWCPVTRRNKNASDFSHSVTCFASPQDIEWSKGKHPICIKGVDVFAVYMFKDDKLKLLKYTESVEVSLEPFSIELLTVSPVVVLPRKSIQFAPIGFVNMLNSGGSILSIEFDKQENLG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1411 423 SUPERFAMILY (Trans)glycosidases 21 264 IPR017853 -
Ssu6g1411 423 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE-RELATED 4 422 - -
Ssu6g1411 423 Pfam Raffinose synthase or seed imbibition protein Sip1 6 419 IPR008811 -
Ssu6g1411 423 PANTHER - 4 422 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1411 Ssu-Chr6 23138887 23141641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1411 6 419 Glycoside Hydrolase AT5G40390 53.901 3.80e-149 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1411 K06617 - gmx:100798883 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1411 6 23138887 23141641 Ssu6g1411 6 23138887 23141641 ECH