Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1403 ATGCCATCAACAGTGAGGGATCACGGGATTGTTCGGAGGATGGCAAGCCTTCCTCGAAGCATAATGGAGGGTATTTCAAGGGCAATGGGGGATGGTATGGGCTTAGTAGGaataggaagaagaagaaatcagcGTGCAAAATTTCCGTTGCAGCCTCAAGACCATGTTCCACAACCACATGATCCCGTAGTAGGTCCAGAGGAATGGAGTTTTCTAGAGAGTTTTGAGCAGCAATATGGCACCAAACATCCTTTCTTCTATGCTTGCAGTCTCGTGGAAGCCATGAAGTTAGCAGAAAAAGATCACAAGTTCTTGTTCATGTACCTCCACTCACCTGACCACCCTTTTGCAAACGTTTTCTGCAAGGAAACCCTGTGTTCGGAGCCAGTGATCCAGTTTCTTGACGTGAATTTTGTTTGCTGGGGTGCACTTGCAGATAGAGGAGAGGGACTGCGAATGGTTGCAACACTAAGCGCTACTACCTTTCCCTGTTGTGCTGTCATAGCCCCCGCTCCTGGTGAGAGCATAGCAGTGCTGCAACAGCTAGAAGGACCCCTTTCACCAGCTGAGCTAGTGGAGATTCTACAAAGAACATTGGAAGAACAAGGGGTGGCTTTTGGAGGTGCCAAAGCTAAACAGGGAGAAAAGATCCGCGCAGACCGTAGGCTTAGAGAAGAACAAGATGCTGCATATCTTGCAGCTTTGCAAATTGACAAGGAAAAAGAGAAACTCACTAGTTTACCTTCAAGAGAGAGAGTTCAGAAGCCAGTGGAAACTCAGAACACCAGAAATAATGGGAAACCGAGGACCAATTCTATCAATGTCACTCAACAGCACAGCAAAGTGAATGAATCCACTAGAGAAAAACGAGACAAGGGAGTTGCAAGCAAAGGAAGCGAGTCTCAGCCCACACAGATACTAATAAGGTTTCCAAACGGGGAAAGAAGAGAGCATACTTTCCTTTACACAGACAAAATCCAGTCCATTTTCTCATACATAGATTCATTAGGTTTGCCAGGGATTGGGAACTACAGGTTGatatcaaactttccaagaaaAGCTTATGGCGTTGATCAAATGAGAATGACTCTCAAAGAGGCTGGCTTGTATCCTAAAGCTAGTGTGTTCCTGGAGCCTTTATGA 1143 0.4453 MPSTVRDHGIVRRMASLPRSIMEGISRAMGDGMGLVGIGRRRNQRAKFPLQPQDHVPQPHDPVVGPEEWSFLESFEQQYGTKHPFFYACSLVEAMKLAEKDHKFLFMYLHSPDHPFANVFCKETLCSEPVIQFLDVNFVCWGALADRGEGLRMVATLSATTFPCCAVIAPAPGESIAVLQQLEGPLSPAELVEILQRTLEEQGVAFGGAKAKQGEKIRADRRLREEQDAAYLAALQIDKEKEKLTSLPSRERVQKPVETQNTRNNGKPRTNSINVTQQHSKVNESTREKRDKGVASKGSESQPTQILIRFPNGERREHTFLYTDKIQSIFSYIDSLGLPGIGNYRLISNFPRKAYGVDQMRMTLKEAGLYPKASVFLEPL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1403 380 MobiDBLite consensus disorder prediction 282 296 - -
Ssu6g1403 380 Gene3D - 298 379 - -
Ssu6g1403 380 SUPERFAMILY Thioredoxin-like 66 203 IPR036249 -
Ssu6g1403 380 SMART 45neu3 70 196 IPR006577 -
Ssu6g1403 380 Pfam UBX domain 300 378 IPR001012 GO:0005515
Ssu6g1403 380 SMART ubx_3 296 379 IPR001012 GO:0005515
Ssu6g1403 380 MobiDBLite consensus disorder prediction 252 281 - -
Ssu6g1403 380 CDD UAS 86 201 - -
Ssu6g1403 380 PANTHER FAS-ASSOCIATED PROTEIN 8 379 - -
Ssu6g1403 380 SUPERFAMILY Ubiquitin-like 297 379 IPR029071 -
Ssu6g1403 380 CDD UBX 306 378 - -
Ssu6g1403 380 Gene3D Glutaredoxin 67 204 - -
Ssu6g1403 380 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 379 - -
Ssu6g1403 380 ProSiteProfiles UBX domain profile. 299 377 IPR001012 GO:0005515
Ssu6g1403 380 MobiDBLite consensus disorder prediction 243 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1403 Ssu-Chr6 22980216 22981967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1403 K18726 - gmx:100775212 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1403 6 22980216 22981967 Ssu6g1403 6 22980216 22981967 ECH