Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1398 ATGGTCATAAGTATCGAGACTGAGCGTCGGGAAAGGAAAGCAAGCAGAATGAAGAAGGGAGGGGCGTTGAGCGTGGTAGTCAACGTGATGTGTTTGGTTATTGTTTGCAGCAGTGCGATCGAGTCCCCGCAATACACAGTAGTACACTCCGAGTCCGATTTCGAGATCAGGCTCTATCGGAGCTCTGTTTGGATGTCCGCTCCTGCCCTCGACATTTCCTTCGAGAAAGCCACCTGGAATGGCTTCCACAGGTTGTTCCAGTTCACAGAAGGTGCCAACCTGAATTTCTCACGAATTCCAATGACTGTTCCCGTGTTGACAACCATGGTCCCCGGAGCCGGTCCCCTTCAATCCCAAGGCTATTACGTTAGTTTGTACTTACCCGTTAAGTTCCAAGGCAGTCCACCGGTGCCGCTTCCAGAACTCAATATCAAGCCCTATGAATTCAGCAGCCACTGCATTGCGGTTAGGAAGTTCTCTGGATTTGCCAAGGATGAGAGGATTGTCAAAGAGGCAGAAAAGCTTGCCACAAGCCTGAGTAGGTCTCCGTGGGCCGAGTCCAAGACTCGGAGTGGTTACTCAATTGCGCAGTACAACACTCCCTTCCGGATTGTGAAGCGCAGAAACGAGGTGTGGGTGGACATTGATGCTCCTGAATTAGGCTGTAAGTCGGTTGGTGTTGCCGCATATTGA 693 0.5108 MVISIETERRERKASRMKKGGALSVVVNVMCLVIVCSSAIESPQYTVVHSESDFEIRLYRSSVWMSAPALDISFEKATWNGFHRLFQFTEGANLNFSRIPMTVPVLTTMVPGAGPLQSQGYYVSLYLPVKFQGSPPVPLPELNIKPYEFSSHCIAVRKFSGFAKDERIVKEAEKLATSLSRSPWAESKTRSGYSIAQYNTPFRIVKRRNEVWVDIDAPELGCKSVGVAAY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1398 230 PANTHER HEME-BINDING PROTEIN-RELATED 22 217 IPR006917 -
Ssu6g1398 230 Gene3D Regulatory factor, effector binding domain 39 219 IPR011256 -
Ssu6g1398 230 Pfam SOUL heme-binding protein 40 213 IPR006917 -
Ssu6g1398 230 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 22 217 - -
Ssu6g1398 230 SUPERFAMILY Probable bacterial effector-binding domain 31 215 IPR011256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1398 Ssu-Chr6 22960190 22961065 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1398 - - gmx:100306073 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1398 6 22960190 22961065 Ssu6g1398 6 22960190 22961065 ECH