Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1388 ATGGCGAACTCGAGCGACGCTTGCGTCGAAGCCCTCCGGCGGCTGAAGGCGACGGATCCACCGTCATGGCTCGCTCCAAACCCGGCGCTGTCGGAAGCTGCTCGCACTGCGTCCCAGTACTTGTTCTCTTCCCTCAAACCATTTTCCCCCAAATCGCCGTTGGACCAACTCCTCGTGGAGGGCTTCGACGCCGAACAGATATGGCAGCAAATCGACCTCCAATCGCAGCCTCTGTTATCCGCCCTTCGCCGCCGCTTGAAGCAGCTGGCCGAAAATCCCGAAGAGATTTCCCGGCTGAAGGTTCCTTCGGAAGGTGGGAACAAGgtggaggaaaagaaaagagacgAGTGGGACGAAGAGAGTGAAGGTTTTGACGAGGAATTGGATGAGGATGAGGACGAAGAAAAGgagggagaagaggaagaagaagaagaagggatgGAGGAGGATGAAGAGAGCGAGGAGGAGAATGAGGAAGGTGGTGGCATTGAGGATAAGTTCTTGAAAATAGATGAATTGGCTAAGTACTtagagaaggaggaagagaaTTTAGAGAATGGTGAGGAAGATAGAGAAGGTGAGGAGGAAgatgacgacgacgacgacgaaaGTGATGAGGATGGTGATTTTAGGATTggtgacaatgatgatgatgaagatgaagaagcaGAGGGCATGGAAAATGCAAGGTATAAAGACTTCTTTGGAGGTAAAAGGGAAAGGGGCTCAAAAAGAAAAGCTCAGGTGCTTCAGGAATCTGAATattctgatgatgaagatgacatGGAATTTGACAAGCAGAAGAAAGGGACTGTATCTGCCCATGAAAAGCAACaagaaaaaattcaatccaagaTAGAGCAGATGGAGAAAGCTAACATAGAGCCAAAAACTTGGACTATGCAGGGTGAGGTAACTGCTGCAAAGAGACCCAAGAATAGTGCATTGGAAGTTGATCTAGACTTTGAGCACAATGTGAGGCCTGCTCCTGTAATCACTGAGGAAGTTACAGCTTCAATTGAGGATATGATCAAGAAAAGGATTATTGAGGGTCATTTTAATGATGTTCAAAGGGTTCCTAAATTGCCATCTAAAGCGCCTCGGGAAGTTAAAGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAAATTTATGAGCAAGAATATGTTCAGAAGACAGACCCCACTTCTGCTCCGTTGTCATTCAAAGATGAACAAAAGAATGAGGCAAGCATGCTGTTTAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTGCTCCAAAACCTGTTATAGAGGACATGTCTATTCAAGCTAATGTGCCTGCTCTGGCAATGGAAGAAATTGCACCTGTTGCTGTTTCTGATGCTGCTATGTTGGCTCCTGAGGAGGTATTTGATGGAACGGGTGATATTAAGGAAGAAGCAGAGCTTACAAAGAcagaaaggaaaagaaggagagctaataggaaaagaaaatttaaagCTGAGGCagtaaaaaggacaaaaaagaagGCACAAGAAGGTGCAATTCATAGCCAAGTTAatggtaatttcttttatatcctttttGTACTAGATCTAAGAAATGTTACATTATCCTCACTTCAATTTTTGAATGTGCCACAAAAGTCAATTTCTTGTTAG 1659 0.3876 MANSSDACVEALRRLKATDPPSWLAPNPALSEAARTASQYLFSSLKPFSPKSPLDQLLVEGFDAEQIWQQIDLQSQPLLSALRRRLKQLAENPEEISRLKVPSEGGNKVEEKKRDEWDEESEGFDEELDEDEDEEKEGEEEEEEEGMEEDEESEEENEEGGGIEDKFLKIDELAKYLEKEEENLENGEEDREGEEEDDDDDDESDEDGDFRIGDNDDDEDEEAEGMENARYKDFFGGKRERGSKRKAQVLQESEYSDDEDDMEFDKQKKGTVSAHEKQQEKIQSKIEQMEKANIEPKTWTMQGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTASIEDMIKKRIIEGHFNDVQRVPKLPSKAPREVKELDDNKSKQGLAEIYEQEYVQKTDPTSAPLSFKDEQKNEASMLFKRLCLKLDALSHFNFAPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEVFDGTGDIKEEAELTKTERKRRRANRKRKFKAEAVKRTKKKAQEGAIHSQVNGNFFYILFVLDLRNVTLSSLQFLNVPQKSISC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1388 552 PIRSF snoRNP_Mpp10 1 522 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Ssu6g1388 552 MobiDBLite consensus disorder prediction 488 503 - -
Ssu6g1388 552 Coils Coil 114 134 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 225 253 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 482 503 - -
Ssu6g1388 552 Coils Coil 170 197 - -
Ssu6g1388 552 Coils Coil 272 295 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 162 182 - -
Ssu6g1388 552 Pfam Mpp10 protein 254 504 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Ssu6g1388 552 Pfam Mpp10 protein 50 265 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Ssu6g1388 552 MobiDBLite consensus disorder prediction 120 161 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 183 224 - -
Ssu6g1388 552 Coils Coil 139 159 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 93 285 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 262 285 - -
Ssu6g1388 552 MobiDBLite consensus disorder prediction 104 119 - -
Ssu6g1388 552 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 512 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1388 K14559 - gmx:100781093 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1388 6 22820235 22824762 Ssu6g1388 6 22820235 22824762 ECH