Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1372 ATGGCTCTCAATTTGTCTTCTCCAGCTGAAGTCAAGTCCATTTTTTTCGCTGACCCCTTCAAGTCTAACATCCTCACTGCAAAATTCCCAGGTGGTTTggcttttaaaagaaaagagtgtGGAGCTGCATCTGGTAGGCGAGTTTGTTGCTCACTGCAGGCACCGCCACCAGCCTGGCCAGGACGAGCGGTTCCTGAACAAGGTCGCAAGACTTGGGATGGACCAAAACCCATTTCCATTGTGGGATCTACTGGTTCAATTGGAACTCAGACACTAGATATCGTGGCAGAGAATCCAGATAAATTTAAAGTTGTGGCCCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCGGACCAGGTAAAAAGATTTCAGCCTCAACTTGTTGCTGTTAGAAATGAGTCCCTTATTGCTGAACTTGAAGAGGCCTTGGATGATGTTGAACAAAAACCTGAGATCATCCCTGGAGAGCAGGGAGTCATTGAGGTTGCTCGTCACCCAGATGCACTCAGTGTAGTCACAGGAATAGTAGGCTGTGCAGGACTGAAGccAACTGTTGCTGCGATAGAAGCAGGGAAAGACATAGCTTTGGCCAACAAAGAGACATTAATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCGGAAGCATAACGTAAAAATACTTCCAGCTGATTCTGAACATTCTGCCATTTTTCAGTGTATCCAGGGGTTGCCAGATGGTGCACTTAGGCGAATTATTTTAACTGCATCTGGAGGTGCTTTCAGGGATTGGCCAGTTGATAAACTAAAAGATGTTAAAGTTGCTGATGCATTAAAACATCCCAACTGGAATATGGGGAAAAAGATAACTGTGGACTCTGCTACCCTTTTTAATAagGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCTGACTATGATCATATTGAGATTGTCATTCAtccacaatcaatcatacattcAATGATTGAAACGCAGGATTCATCTGTTCTTGCACAGTTGGGGTGGCCTGATATGCGCTTGCCAATCCTCTATACATTATCATGGCCTGACAGGATTTATTGTTCTGAAGTCACTTGGCCCCGCCTTGATCTTTGCAAGCTTGGTTCACTTACATTTAAAACTCCAGATAATGTAAAGTATCCATCCGTGAATCTTGCCTTTGCTGCTGGCCGTGCCGGAGGCACAATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAGATGTTTATTGATGAAAAGATTAGCTATTTGGATATATTCAAAGTTGTGGAGCTAACATGTGAGAAGCATCAAAATGAATTGTCATCCTCGCCTTCCCTTGAGGAAATTATTCACTATGACCTATGGGCGCGAAAATATGCTGCTAGTTTGCAAAACTCTTCCGGCTTGGCTCCTGTTCCTGCATGA 1419 0.4264 MALNLSSPAEVKSIFFADPFKSNILTAKFPGGLAFKRKECGAASGRRVCCSLQAPPPAWPGRAVPEQGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVKRFQPQLVAVRNESLIAELEEALDDVEQKPEIIPGEQGVIEVARHPDALSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLARKHNVKILPADSEHSAIFQCIQGLPDGALRRIILTASGGAFRDWPVDKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGADYDHIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKTPDNVKYPSVNLAFAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELSSSPSLEEIIHYDLWARKYAASLQNSSGLAPVPA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1372 472 Gene3D - 380 465 - -
Ssu6g1372 472 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 78 461 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu6g1372 472 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 458 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu6g1372 472 PIRSF Dxp_reductoisomrs 75 467 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu6g1372 472 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 368 462 IPR036169 -
Ssu6g1372 472 Pfam DXP reductoisomerase C-terminal domain 335 456 IPR026877 -
Ssu6g1372 472 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 465 IPR003821 GO:0008299|GO:0030604|GO:0046872
Ssu6g1372 472 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 465 - -
Ssu6g1372 472 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 220 303 IPR013644 GO:0005515
Ssu6g1372 472 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 201 338 - -
Ssu6g1372 472 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 78 206 IPR013512 GO:0070402
Ssu6g1372 472 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 224 IPR036291 -
Ssu6g1372 472 Gene3D - 69 224 - -
Ssu6g1372 472 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1372 Ssu-Chr6 22559081 22565200 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1372 K00099 - gmx:100790607 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1372 6 22559081 22565200 Ssu6g1372 6 22559081 22565200 ECH