Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1360 ATGGATGGAATAGCGGTAATAATGgcaaatatttctaatttgcaGACCTACATTTGTAGCGATATGGAAGGCAAAATCAGTGCAAGATTTCAGGCCAGATCCTTATATTGCGACAATACTCAATTGTGCAATGTGGTCATTCTATGGATCGCCCTTCCGGTAGTGGTAATTGTAATCATGACATTTGTTCACTCCGCCAAGCACAGAAAGGTGATTGTTGGACCTATATGCATAGTCTTCAACATCCTTATGTACGTTTCACCCTTGACTGTCATGCGACAAGTAATTCGAACGAAGAGCGTGAAGTACATGCCTTTTTTACTATCACTCGCCAACTTCGTCAATGGAGTCGTCTGGACGACCTATGCATTGCTTAAGTGGGATCCATTTGTCgcgGTTCCCAATGGCTTGGGAACACTTTCTGGATTGGTGCAGCTCATCCTCTATGCCGTTTACTACCGAAAAACCAAGTGGCATGAAGATGCCCCTCCTTGCGTATGA 501 0.4232 MDGIAVIMANISNLQTYICSDMEGKISARFQARSLYCDNTQLCNVVILWIALPVVVIVIMTFVHSAKHRKVIVGPICIVFNILMYVSPLTVMRQVIRTKSVKYMPFLLSLANFVNGVVWTTYALLKWDPFVAVPNGLGTLSGLVQLILYAVYYRKTKWHEDAPPCV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1360 166 Gene3D - 70 162 - -
Ssu6g1360 166 Pfam Sugar efflux transporter for intercellular exchange 72 156 IPR004316 GO:0016021
Ssu6g1360 166 PANTHER RAG1-ACTIVATING PROTEIN 1 45 162 - -
Ssu6g1360 166 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET5 45 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1360 Ssu-Chr6 22202885 22205186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1360 54 157 Miscellaneous Gene Families AT4G10850 53.846 4.84e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1360 K15382 - gmx:100810948 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1360 6 22202885 22205186 Ssu6g1360 6 22202885 22205186 ECH