Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1354 ATGCGATCCTCACGTATTCACAGCTTCACCGCCCTCGCCGTGTTGCTCATTGCGATCCTCCCCCACGTTCGGGGACGCGCGACAACTCCAGCCTCCAAACTAGGCGTCAAATCACTCCTTTCTCCCTTTTCAACAGCTCTTGAAACCCTCCAGAAACAACTCGGGTACACCTTCAAGAGCATCGATCTTCTTCGTCGTGCCATGACCCACGCTTCCTTCTCCGAGGAGAACAACAAGGCTTTCGGCATTCTCGGCGCCAGCCTCATCGAAACCTCCGTGTCTTTCCACTTGCTCTCCAAAGACGTTGATGTTTCTCCGAAAGAGCTGAACCGTCGATTGTCCCAAATCACCAACGTGGAGTCCTCCTGCGCCGTCGATGGAGTGCGATTAGGGTTGCACAAGGTGGTTCGTGTCTCGCCCAAGACCAATTCCTCCGCCCCCGCCGTCGTTTGCGGCGCGTTCCGAGCAATCTTTGGTGCCATTGCTATTGACACTGGCAAGTCCGATGACGCAGGTAACGTTTTCTGGAACCTTCACGGCGGTGACCTACGAGTTGCCGTGGCTCTTTGA 570 0.5544 MRSSRIHSFTALAVLLIAILPHVRGRATTPASKLGVKSLLSPFSTALETLQKQLGYTFKSIDLLRRAMTHASFSEENNKAFGILGASLIETSVSFHLLSKDVDVSPKELNRRLSQITNVESSCAVDGVRLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAIAIDTGKSDDAGNVFWNLHGGDLRVAVAL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1354 189 Gene3D Ribonuclease III domain 45 183 IPR036389 GO:0004525|GO:0006396
Ssu6g1354 189 SUPERFAMILY RNase III domain-like 41 174 IPR036389 GO:0004525|GO:0006396
Ssu6g1354 189 Pfam Ribonuclease-III-like 62 168 IPR000999 GO:0004525|GO:0006396
Ssu6g1354 189 ProSiteProfiles Ribonuclease III family domain profile. 47 166 IPR000999 GO:0004525|GO:0006396
Ssu6g1354 189 PANTHER RIBONUCLEASE 3 23 166 - -
Ssu6g1354 189 CDD RIBOc 62 169 IPR000999 GO:0004525|GO:0006396
Ssu6g1354 189 SMART riboneu5 62 188 IPR000999 GO:0004525|GO:0006396
Ssu6g1354 189 PANTHER RIBONUCLEASE III 23 166 IPR011907 GO:0003723|GO:0004525|GO:0006364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1354 - - gmx:100527745 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1354 6 22109166 22109897 Ssu6g1354 6 22109166 22109897 ECH