Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1352 ATGCCTTCCCTCACTCACACAGTCGCTCACTCTAGTATGGGGACGACAACGACACCCCTTTCTCAGACGGTTCGCGTGTTCAACATACCTCAATCTGCCAACGCGAAGGACCTCCTCGACTTCCTCGAATCGACGGTGGGTCCCTCCACCGTCTACGCCCTCGAAATCTTCTCCGACAACCCTAACTGGAAGTCCCGCGGCACCGGCCGCGTCCAGTTCGAGACCGTCGACGCCAAGTCCCGCGCCCTCTCTCTCTCCCGCGACAACCaactcctcttcctctcccactTCCTCCGCCTCTCCGAAACCTCCGACGACATCGTCTTCGCGCCCCGCCACCGCCTCCAAAACGGCGTCCTCTACGCCGGTTTCATGCTCTCCGGCCACCGCATGAGCGTCCTCGACTCCTGGGAGGGCGTCGCGGGTTGGGTCATGCCCCAAAGGAAGAGGCTTGACTTCTGGGTGTGGCATAACGGCGAGTGTTACAGACTCGAGATTATGTTTGAGGATATTTTGGAGTCTCATGGGTATTGTTTGGGAGAAGATGCCAAACTCAATGCCCTCCTCTTGAAGTTGAAATATGGGCCAAGGATTTATCAGAAGAAAGCGGGGCCAGATGTGGCAGCCAAGTTTAGGGCTGATAGGTACCGTTTTTGCAAGGAGGATTTTGAGTTTCTTTGGGTGCGGACTACTGACTTCTCGGCTCTGAAGTCAATTGGGCACTCTACTTCATTTTGTTGGGAAGTTGAGGAAGAACATTTAGCTTCCGATGTTTTTACGAGTTTCCCACTCTACAAGGAAAATTTCAGAGATTTGGCTCTGGAAGACGGGGAAGAGTTCTGTTCTTCCACGGAAGCAGTTCCGCTTGTAAAGTGTGCTTCACAATCCAAGTTACCTTATGAGGCCCTTTTCCAGCTGAATTCTCTTGTTCATACCCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTAGGGGGCTTAGATGAAGAAAGTAGGGCTGTGATTTTTCAGAAATTGCACAAGATGAGCTCCACTTGTTATGAGCCTCTCAAATTTGTGAAGACTCAATTGCATGTGCTGAGTAACAAGAGTAGAAGTCTGCCGCAATCATTGCAGAAGACGGATAATAACATTATGAGCTGTCACAGAGCCTTGATTACCCCAACAAAGATTTATTGCCTTGGTCCGGAGCTTGAAACCTCAAATCATGTGGTAAAGCACTTTGCATCATATGCTTCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACCGGTGTGCAAAAGGGGATCTTTTCAAAGCCTTTTAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGATCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATGCTGTTTGGTTATTTGCTTCTAATGACAATGTGAGAGCAGCAGATATCAGAGAATGGATGGGATGCTTCAACAATATCCGCAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGGCCCCTCAAGATGTGGAGATAATTCCAGATATTGAAGTTACCTCTGATGGCATAAGCTACTGTTTCTCTGATGGTATTGGAAAAATTTCACAAGCTTTTGCAAGGCAAGTTGctcaaaagctaaaattggATCATAGTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCTGTTGATCGCCGTTCCTTTAGGAAGTTATCATTGCGTGGCAGTATGCTTAAGTTTGAATCCAAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCTACCTTAGGAGTAAAAGATGAGGTGTTTTTGGCAATGCAACAGGAACAATTGCATTTGTTAGGTAGGATGTTGACTGATAGTAAGGCAGCTTTGGATGTTTTGGAAAGTTTGAATGGAGCTGATTCAAGGAGCATTCTAGTGAAGATGTTGCATGAATTTAACGAGCCAAACAACGAGCCTTACCTATCAATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGAGTcttggtaggttgcttggatgaAACTGGTCGTTTGGATTATGGCCAAGTATTTGTCCGCATAACTGTGACAAAAACTATGGAAAAATTTGGAGATGAAAACTTAAGGAAAGTGGACGGCGATGATAGCACACGTATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACATCAGAATCCTTGATGCTATCTACAATGAAGAATTAGAGGAGAAGGGTTTGAGGGATTGCCTTGTATTTCCACAAAAAGGACACAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGCGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATCCCATGTAAAGCTGAGGCTCCAATGGACTACACAGGAAGGAGGCCTCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCcaacaattttttgttgattacaTGATCAATGATACTTTGGGTGCTATCTCCACCGCACATCTGGTTCTTGCTGACCGTGAACCAGATAAGGCCAAGAGTAGAAAATGCTTGGAGTTGGCACAGCTTCATTCCATGGCTGTCGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCCAGATTTTTGAAACCGAGGGAGTTTCCAGACTTCATGGAGAGGGTGGACAAGCCTATGTATATCTCGAACGGGGTACTAGGAAAACTATATCGTGCCATAATTGAGTCACAATTGCAAATAAGATATAGCTTTGTGTGGTCAGAGAAGCTTGCTGAACAAGCATATGATTGTAGCCTTGAAGTTAATGGTTTTGAGGCCTTCCTCGAGACAGCATCAAGTCACAAAGAAATGTATGCACAGAAGATGAGCAGTTTAATGAACTTCTATGGTGCAGAGACCGAGGATGAAATGCTAATTGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGTGATAACAGGAGATATGGTGATATGAAGGATCGGATTCTGCTCTCGGTGAGGAATCTTCAGCGCGAAGCAAAAGAATGGTTTGAAACTAGTTGCCAACCGCATGAGTATAAGCCTATGGCATCTGCATGGTATCACGTGACCTATCACCCGAGCTATTGCCACGAAAGCTCATGTTTTTTAAGCTTTCCATGGATAGTTGGTGACATTTTATTGCAAATAAAGCCTGTAAACAAAGGAGTTCACACATGA 3390 0.4381 MPSLTHTVAHSSMGTTTTPLSQTVRVFNIPQSANAKDLLDFLESTVGPSTVYALEIFSDNPNWKSRGTGRVQFETVDAKSRALSLSRDNQLLFLSHFLRLSETSDDIVFAPRHRLQNGVLYAGFMLSGHRMSVLDSWEGVAGWVMPQRKRLDFWVWHNGECYRLEIMFEDILESHGYCLGEDAKLNALLLKLKYGPRIYQKKAGPDVAAKFRADRYRFCKEDFEFLWVRTTDFSALKSIGHSTSFCWEVEEEHLASDVFTSFPLYKENFRDLALEDGEEFCSSTEAVPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEESRAVIFQKLHKMSSTCYEPLKFVKTQLHVLSNKSRSLPQSLQKTDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNAVWLFASNDNVRAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVAPQDVEIIPDIEVTSDGISYCFSDGIGKISQAFARQVAQKLKLDHSPSAFQIRYGGYKGVIAVDRRSFRKLSLRGSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQQEQLHLLGRMLTDSKAALDVLESLNGADSRSILVKMLHEFNEPNNEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGRLDYGQVFVRITVTKTMEKFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRILDAIYNEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCKAEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVLADREPDKAKSRKCLELAQLHSMAVDFAKTGAPAAMPRFLKPREFPDFMERVDKPMYISNGVLGKLYRAIIESQLQIRYSFVWSEKLAEQAYDCSLEVNGFEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMLIGNLQNRASYLQRDNRRYGDMKDRILLSVRNLQREAKEWFETSCQPHEYKPMASAWYHVTYHPSYCHESSCFLSFPWIVGDILLQIKPVNKGVHT 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1352 1129 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 121 193 - -
Ssu6g1352 1129 Pfam RNA dependent RNA polymerase 390 969 IPR007855 GO:0003968
Ssu6g1352 1129 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 105 IPR000504 GO:0003723
Ssu6g1352 1129 PANTHER RNA-DEPENDENT RNA POLYMERASE 18 1125 IPR007855 GO:0003968
Ssu6g1352 1129 Gene3D - 9 107 IPR012677 -
Ssu6g1352 1129 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 18 1125 - -
Ssu6g1352 1129 SUPERFAMILY RNA-binding domain, RBD 19 90 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1352 Ssu-Chr6 22097403 22102490 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1352 K11699 - gmx:100808274 2028.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1352 6 22097403 22102490 Ssu6g1352 6 22097403 22102490 ECH