Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1350 ATGTCATCTCCAagcaagagaagagaaatggaTGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAATTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAGCTTCCTGATGCTTACCCATACAAATCCCCTTCTATTGGCTTTGTGAACAAAATATTCCACCCAAATGTCGATGAGCTATCTGGGTCTGTATGCTTGGATGTCATTAACCAATCTTGGAGTCCAATGTTCGATCTTCTAAATGTCTTTGAAGTTTTTCTTCCCCAACTCTTGCTTTATCCAAATGCTTCAGATCCTCTAAATGGTGATGCAGCATCGTTAATGATGAAGGATAAAAAGCTGTATGACCAGAAAGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAAAACATTACCAACTCTATAGCTGGTGAGGAGAGTGGAGATGAGGAAGACATCAGTGAAGAAGAAAGTGGATCTAGTGATGATGAAATTCCTGGTCAAGCTGATCCTTAA 558 0.3781 MSSPSKRREMDVMKLMMSDYTVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENITNSIAGEESGDEEDISEEESGSSDDEIPGQADP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1350 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Ssu6g1350 185 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Ssu6g1350 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Ssu6g1350 185 SMART ubc_7 4 148 - -
Ssu6g1350 185 MobiDBLite consensus disorder prediction 159 177 - -
Ssu6g1350 185 SUPERFAMILY UBC-like 4 150 IPR016135 -
Ssu6g1350 185 CDD UBCc 7 143 IPR000608 -
Ssu6g1350 185 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Ssu6g1350 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 185 - -
Ssu6g1350 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 185 - -
Ssu6g1350 185 MobiDBLite consensus disorder prediction 153 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1350 Ssu-Chr6 22077999 22083601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1350 4 117 Miscellaneous Gene Families AT3G17000 23.770 2.38e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1350 K10576 - gmx:100527526 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1350 6 22077999 22083601 Ssu6g1350 6 22077999 22083601 ECH