Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1346 ATGGGAGACAACAAACGTAAGAGAGGACGCAAACCCAAAACCCCCGCCCCCGAAACCCTAGACCTCCCCGCCACCGTCCCCACCACCACGACGaccaccaccgccaccgccCCAACCACCACGACCACCGCAATGGACGACGTCTTCTCCGTGGGCAACGTCGAACTGATCGACAACGCCGCCGCTCCCGACCTCCGTCGCCGCCGCGGCCGCCCCAAGAAGCTCCCCAACCACTCGGACAAGCCCCTCTCCCTGGCGATGGGGCGCCGCCTCGCCCGCCCCCTCGACGGTGCCGGAGACTTCACGGTGCCCGGCGACGTCGGAGTCTCCCCCGCGGTGGCCATGGAGGCGGACCCGGCGTGGGAGGCGAGGGTGTTGCCGGCGATGGACTCGGTGGTGAAGGTGTTCTGCGTGCACACGGAGCCGAACTTCTCGCTGCCGTGGCAGAGGAAGAGGCAATACAGCTCGAGTAGCAGCGGGTTTGTGATTGGCGGCAGAAGGGTTCTCACCAATGCGCATTCCGTGGAACACTACACCCAGCTCAAGCTCAAGAAACGTGGCTCTGACACCAAGTACTTGGCCACCGTGCTTGCCATTGGAACCGAATGTGACATTGCAATGCTTAcagttgatgatgatgagttcTGGCAAGGGATGTCACCTGTCGAGTTTGGGGATTTGCCCACACTTCAAGATGCGGTTACTGTTGTGGGCTACCCAATTGGTGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGTATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGATAGATGCTGCCATAAATTCTGGCAATTCTGGGGGCCCTGCATTTAATGATAAAGGAAACTGTGTGGGGATTGCATTTCAGTCCCTCAAGCACGAAGATGTGGAGAATATAGGTTATGTCATTCCAACGCCAGTTATCATGCATTTCATCCAGGATTATGAGAAGAATGGAGGATATACCGGGTTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTGCGAATGGCAATGGGCATGAGACCTGATCAGAAAGGTGTGCGCATTAAAAGAATTGATCCTACTGCTCCAGAATCTAAAGTTTTGAAGCCATCAGATGTTATCCTTAGTTTTGATGGGGTTGATATTGCCAATGATGGAACAGTTCCATTTCGTCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCCCAGAAATATACCAGGGATAATGCAACAATCAAAGTACTGCGAAATTCagatattttcaaatttgacaTTAAACTCGATAGTCACAGAAGGCTTATTCCAGCACATAGCAAGGGCAAGCCTCCCTCATATTATATAATTGCAGGATTTGTTTTTACAACTGTTTCAGTTCCATATCTTCGTTCTGAGTACGGAAAAGATTATGAATATGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCGATGCCACAATCACCGGATGAACAACTTGTTGTGGTCTCCCAGGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACCCAGGTCCTTGCTTTCAATAGTAAACCTGTGAAAAATCTGAAGAGCTTGGCCACTATGGTAGAGAGCTGCAATGATgaatatctaaaatttgatctAGAATATGATCAGATAGTGGTCCTTCGCACAAAGACTGCAAAAGCAGCTACTCTTGATATTCTTGCAACACACTGTATTCCATCAGCAATGTCTGATGATCTCAAATCATGA 1779 0.4772 MGDNKRKRGRKPKTPAPETLDLPATVPTTTTTTTATAPTTTTTAMDDVFSVGNVELIDNAAAPDLRRRRGRPKKLPNHSDKPLSLAMGRRLARPLDGAGDFTVPGDVGVSPAVAMEADPAWEARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQLKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGDLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGGYTGFPILGVEWQKMENPDLRMAMGMRPDQKGVRIKRIDPTAPESKVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTRDNATIKVLRNSDIFKFDIKLDSHRRLIPAHSKGKPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNSKPVKNLKSLATMVESCNDEYLKFDLEYDQIVVLRTKTAKAATLDILATHCIPSAMSDDLKS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1346 592 MobiDBLite consensus disorder prediction 23 41 - -
Ssu6g1346 592 Gene3D - 216 327 IPR043504 -
Ssu6g1346 592 Gene3D - 443 592 IPR046449 -
Ssu6g1346 592 Gene3D - 330 442 IPR036034 GO:0005515
Ssu6g1346 592 CDD PDZ_serine_protease 335 435 - -
Ssu6g1346 592 Pfam PDZ domain 444 589 IPR041517 -
Ssu6g1346 592 MobiDBLite consensus disorder prediction 62 83 - -
Ssu6g1346 592 MobiDBLite consensus disorder prediction 1 41 - -
Ssu6g1346 592 PRINTS HtrA/DegQ protease family signature 376 388 IPR001940 GO:0004252|GO:0006508
Ssu6g1346 592 PRINTS HtrA/DegQ protease family signature 188 208 IPR001940 GO:0004252|GO:0006508
Ssu6g1346 592 PRINTS HtrA/DegQ protease family signature 160 172 IPR001940 GO:0004252|GO:0006508
Ssu6g1346 592 PRINTS HtrA/DegQ protease family signature 267 284 IPR001940 GO:0004252|GO:0006508
Ssu6g1346 592 PRINTS HtrA/DegQ protease family signature 230 254 IPR001940 GO:0004252|GO:0006508
Ssu6g1346 592 PANTHER PROTEASE DO-LIKE 9 4 591 - -
Ssu6g1346 592 PANTHER - 4 591 - -
Ssu6g1346 592 SUPERFAMILY Trypsin-like serine proteases 125 329 IPR009003 -
Ssu6g1346 592 Pfam Trypsin-like peptidase domain 159 296 - -
Ssu6g1346 592 Gene3D - 110 215 IPR043504 -
Ssu6g1346 592 SUPERFAMILY PDZ domain-like 360 442 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1346 Ssu-Chr6 22022410 22027698 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1346 K25897 - gmx:100817187 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1346 6 22022410 22027698 Ssu6g1346 6 22022410 22027698 ECH