Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1334 atggaaaagaagcGCAAGAGGAAGCAGCGGGTGGCGCGTGACGAAGAGCCAAAGCCCAAGCCGGTTCGTGTGGGTCCAACCCGAACCGACAATGTGAAAGATCCATTCCCATCTCACGCTCGACCCACCCCACAGGAATGCCAAACCGTACGAGACACTCTCTTAGCCCTACACGGTATTGCCCCGGAACTCGCCAAGTACCGCAAATTCCAACCACCCAATGACGCGGTCCAACCGGAGCCACCCGAGCCCGTTCTGGACGGTTTGGTCCGAACCGTCCTCTCGCAGAACACCACTGACGCCAATTCCCAACGGGCTTTCGCTTCCCTCAAATCCTCCTTCCCCACTTGGGAACATGTTCTTGGTGCCGAGTCCATGGAGGTGGAGAATGCCATTCGGTGCGGAGGGCTAGCCCCAACTAAGGCTTCATGTATTAAGAATTTGTTGCGTTGTTTGCGCGAGAGAAGAGGCGAATTGTGTTTGGAGTATTTGCGAGACTTGTCCGTTGATGAAGTTAAGGCTGAGCTGTCTCTTTTCAAAGGAATTGGTCCCAAAACAGTGGCTTGTGTGTTGATGTTCAATCTTCAGCAAGATGATTTTCCTGTGGACACTCACATATTTGAGATTGCAAAAACCATTGGTTGGGTACCAGCTGTTGCAGACAGAAATAAGTCGTATCTTCATCTAAACCAAAGGATACCAAATGAACTTAAGTTTGACCTGAATTGCCTTCTGTATACGCACGGGAAGCTTTGCCGCGAATGCTCCGGTAAAAAGGGTAACAAGCAAGGAAGGAAGTGTAACGATAACACCTGCCCTTTATTGAATTATGATAAAGAGACAGTTGAAGTTTGA 855 0.4901 MEKKRKRKQRVARDEEPKPKPVRVGPTRTDNVKDPFPSHARPTPQECQTVRDTLLALHGIAPELAKYRKFQPPNDAVQPEPPEPVLDGLVRTVLSQNTTDANSQRAFASLKSSFPTWEHVLGAESMEVENAIRCGGLAPTKASCIKNLLRCLRERRGELCLEYLRDLSVDEVKAELSLFKGIGPKTVACVLMFNLQQDDFPVDTHIFEIAKTIGWVPAVADRNKSYLHLNQRIPNELKFDLNCLLYTHGKLCRECSGKKGNKQGRKCNDNTCPLLNYDKETVEV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1334 284 CDD ENDO3c 89 249 IPR003265 GO:0006284
Ssu6g1334 284 Pfam HhH-GPD superfamily base excision DNA repair protein 90 231 IPR003265 GO:0006284
Ssu6g1334 284 Gene3D - 202 252 IPR023170 -
Ssu6g1334 284 PANTHER - 3 281 - -
Ssu6g1334 284 MobiDBLite consensus disorder prediction 7 23 - -
Ssu6g1334 284 Gene3D Hypothetical protein; domain 2 83 201 - -
Ssu6g1334 284 SUPERFAMILY DNA-glycosylase 84 256 IPR011257 GO:0003824|GO:0006281
Ssu6g1334 284 SMART endo3end 94 251 IPR003265 GO:0006284
Ssu6g1334 284 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1334 K10773 - gmx:100802952 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1334 6 21828838 21832078 Ssu6g1334 6 21828838 21832078 ECH