Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1324 ATGGCAGATGCTTTAGCCGCCGATGACAAGCATCAAAACCCTTGTTCTGATTCGCCCCCTGTGGTTTTGCCTTGTGAGGCAACGAATTTAGGGTCTCCGAATTCAAAACCCGAGAGTGGTAGATTGGTTCCTTGGGGCTCTGGTAATAGCCGAGCGTGGAGGGCCGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCATAGTATGCCAAACCCTGATCGGCGTCGTGGAGGAGGGGTCCCTTGGGGTCGCACCTCCACGCCATCCTCGTGTCCAATTTGCTGTGAGGATCTCGATTTGACGGACACGAGTTTCTTGCCCTGTCTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTCTCGAGGAGGATGGCCGGTGTCCCGGGTGTAGGAAGCCTTATGAGTGTGAGCCTGTTGAGACAGAGGCCAGTGTGCTTGGAGGCAGCCTCACTCTTCGGCTGGCGCGTTCGTGTAGCATGATCGAGAGGTCTTGA 513 0.5497 MADALAADDKHQNPCSDSPPVVLPCEATNLGSPNSKPESGRLVPWGSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRRGGGVPWGRTSTPSSCPICCEDLDLTDTSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVETEASVLGGSLTLRLARSCSMIERS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1324 170 CDD mRING-HC-C4C4_CNOT4 95 138 IPR039515 -
Ssu6g1324 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 151 IPR013083 -
Ssu6g1324 170 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Ssu6g1324 170 MobiDBLite consensus disorder prediction 1 47 - -
Ssu6g1324 170 MobiDBLite consensus disorder prediction 60 87 - -
Ssu6g1324 170 Pfam RING/Ubox like zinc-binding domain 95 141 - -
Ssu6g1324 170 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 168 IPR039780 GO:0004842|GO:0030014
Ssu6g1324 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 168 - -
Ssu6g1324 170 SUPERFAMILY RING/U-box 90 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1324 Ssu-Chr6 21651447 21651959 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1324 - - var:108330419 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1324 6 21651447 21651959 Ssu6g1324 6 21651447 21651959 ECH