Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1310 ATGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGCTTCAACGTTTCTTTGAGAAGTACACACATAGGATCACGAGTTACTTCTACCCTTACATTCGAATCTCCTTCCATGAGTTCATGGGAGACAGGCTGAAGCGCAGTGAGGCCTATGCAGCTGTGGAGGCATACCTCAGTGCCAACACATCAAGGAGCGCCAAAAGGCTCAAAGCTGAGATGGGTAAGGACAATAGCAACTTGGTGTTGACTATGGATGAGTACGAGAGAGTAACCGATGATTATGAAGGTGTAAAAGTTTGGTGGGTCTCTAGCAAGGCTATGTCACCAACAAGGTCCCCAATGTCTTATTATCCCGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACAACAAGTATAGGGACATAATAACGGGGTCCTATTTGGAACATGTGATAAGGGAGGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCGAGTTACAAGCAAACGATGTGGAGCCACATCGTGTTTGAGCACCCTGCAACGTTTGACACAATGGCCATGGAGCctgagaagaagaaagagatcaTTGAGGATTTGGTGACTTTCAGCAAGAGCAAGGATTTCTATGCCAGGATTGGGAAGGCATGGAAGAGGGGGTACCTTCTTTATGGCCCTCCTGGGACTGGCAAGTCCACTATGATTGCGGCAATGGCCAATTTGTTGGCTTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACCGAGCTGAGGAAGCTTTTGATTGAGACAACAAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAACAAGAAGGCCGATAAGTTGTCAGATGACGAGAATGAGACGGATGTTGTTGGAAGGAAAGAGGCCAAGGAGGAAGGAGGGAGTGGCAGCAAGGTTACGCTCTCGGGGCTGTTGAATTTCATTGATGGGATATGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACCAATTATGTGGAGAAGCTTGATCCTGCTCTCATTAGAAGGGGGAGAATGGACAAGCATATTCAGCTCTCCTATTGCACTTTTGATGGCTTTAAAGTGCTTGCCAATAATTACTTGAAGCTTGAAACTCATCCATTGTTTGATACTATTAAGAGGCTGATAGGGGAGGTCGAGATCACCCCAGCTGACGTTGCTGAAAACCTTATGCCTAAGTCCCCACTGGATGATGCTCACAAGTGTCTCTCAAACTTGATTGAAGCGCTTGAGGAAGCTGCAAAAGCTGAGGAGCTGAGGCACATTAAGGAGGACCATGAGGAACTTGTTCAACAGAATGGGTCCATTAAGGAAAATGGTGAGCTTCCGGGTCGGAAAGCAACTGATCAAGCAATGAATCAATGCCAGCTATGGCTCGTTAATGATACATAA 1533 0.4579 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYGLQRFFEKYTHRITSYFYPYIRISFHEFMGDRLKRSEAYAAVEAYLSANTSRSAKRLKAEMGKDNSNLVLTMDEYERVTDDYEGVKVWWVSSKAMSPTRSPMSYYPEQEKRFYKLTFHNKYRDIITGSYLEHVIREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFDTMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRNKKADKLSDDENETDVVGRKEAKEEGGSGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFDTIKRLIGEVEITPADVAENLMPKSPLDDAHKCLSNLIEALEEAAKAEELRHIKEDHEELVQQNGSIKENGELPGRKATDQAMNQCQLWLVNDT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1310 510 Pfam ATPase family associated with various cellular activities (AAA) 246 393 IPR003959 GO:0005524|GO:0016887
Ssu6g1310 510 Coils Coil 447 467 - -
Ssu6g1310 510 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Ssu6g1310 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 442 IPR027417 -
Ssu6g1310 510 SMART AAA_5 241 396 IPR003593 -
Ssu6g1310 510 ProSitePatterns AAA-protein family signature. 364 383 IPR003960 GO:0005524|GO:0016887
Ssu6g1310 510 MobiDBLite consensus disorder prediction 315 339 - -
Ssu6g1310 510 CDD AAA 242 394 - -
Ssu6g1310 510 PANTHER ATP BINDING PROTEIN 4 481 - -
Ssu6g1310 510 PANTHER BCS1 AAA-TYPE ATPASE 4 481 - -
Ssu6g1310 510 MobiDBLite consensus disorder prediction 315 341 - -
Ssu6g1310 510 Gene3D - 390 455 - -
Ssu6g1310 510 Gene3D - 201 389 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1310 Ssu-Chr6 21401518 21403050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1310 206 419 Miscellaneous Gene Families AT5G58870 28.829 3.24e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1310 - - gmx:100798176 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1310 6 21401518 21403050 Ssu6g1310 6 21401518 21403050 ECH