Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1307 ATGAAGACGACGAAGGGCGGCAAGGTGATGAACCCTACCGATGCTTACCGAAAGGAGCTTCGCAAGAAAGAATTGAAAAGGAATAAGAAGGAGAGAAAGAAGGTGAGGGAGGTGGGGATTTTGAAGAAAGATCCTGAACAATTGAAGAAGCAGATTGAGAACTTGGAAATGATGAAGGCTGATGGTGCGTTGGATAAAGCAAGAAAGCACAAGAAGAGACAGCTACAAGATACACTTAATCTTGTCCTAAAGAAGAGGAAGGAAtatgaagagaaaatgaaggagaAGGGTGAGACCCCTGTTATGTTCAGTCATTTGGGGCCTCCTCGGAGGAGAACAACtgcagaagaagaagagagggtTAAACACCCAAAGCCTGAGGACTCTGTTTATTATCATCCTACATTAAACCCTACTGGGGCTCCACCACCAGGGAAACCTCCTATGTTTAAATCATCTATTGGACCCAGAATTCCTTTGTCTGGTGCATCATCAAGTGCTGCTGCATCATCCTCAGCGACAGAGTCAGAGGATGACGTAATAACTGTACCTCCACCTCCCCCGCCGCCACCACTGCCTGATGGTAGCGGTGCAAGTTCAGCAGATGGTGCTGTTTTACCCGCATCCTTACCACTGCCTCCTCCCCCTCCCATGCCTCCAAAGCCTGCTAGTGCTGTTCCTACATCATTACCACCACCTCCTTTGCCGCCTCCACCTCCTGGGCCCCCACCTAAAGAACAAGTTGCAAATCGTCCTATACCCCCTCCACCCCCACCCCTACAACAGTCTCAACCTCCTCCACCTGGCACCAGTGGAGGTGAAGGGAGAAATCAGTCTGCATTGACAGATGATTCACCTTCCAAAGAGCCTGGTCAGGTGCAGCTTCCTCCACCTCCTCCACCTAGTCAGGTGCCACCAAAGTCTGGTGTGATTCAGTCTGATGGTGCTGTGGTTTCTACTAAGAATAAGAATTCTCTGTCAAGCCAGGAGATCCCAAAAATGGTTGCTGGGCATCCTCCTCCAAGGCAACAACCTCCTGTTCCAGGACCCACCCTAATCCCAAGTTTACAGCCTGATGTATTACCCCCTGGAATATCTCGTTTTCCACCACCCCTGCCACCACCTGATATGAGGCCTCCTTTACCCGTGGCAGGACTTCCTGCTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATTCCAAGGCCACCATATGGTCCTCCACCTGGGCCTCCTCCAATGATGAGACCTCCACTTCCACCTGGTCCTCCTCCAAACTTCCAGGAAGAAGATCATATGGCAACTAGgccacctcctcctcctcctcctccacaGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGACCATTAGCTCAGCACACTCCAGAACTCACAGCTATGGTTCCTGCATCTGTGCGAGTGAGAAGAGAAACTGCAATGactaaaacaaaaccaaaaccgTCATTGTCAACCTCTAGGACAGTCTCTGGGACATCAGGGCCGACTATTATAAAATCAGAGTCGGTGAGCTCGTCATCAGCTCCAAAAGCACAGAGCATTGATGACTCGTATACAGCTTTCTTAGAGGACATGAAAGCACTTGGTGCACTTGATGGTTGA 1635 0.4703 MKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPEQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVLKKRKEYEEKMKEKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGASSSAAASSSATESEDDVITVPPPPPPPPLPDGSGASSADGAVLPASLPLPPPPPMPPKPASAVPTSLPPPPLPPPPPGPPPKEQVANRPIPPPPPPLQQSQPPPPGTSGGEGRNQSALTDDSPSKEPGQVQLPPPPPPSQVPPKSGVIQSDGAVVSTKNKNSLSSQEIPKMVAGHPPPRQQPPVPGPTLIPSLQPDVLPPGISRFPPPLPPPDMRPPLPVAGLPAQAPPPGMMVPLIPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHMATRPPPPPPPPQKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRRETAMTKTKPKPSLSTSRTVSGTSGPTIIKSESVSSSSAPKAQSIDDSYTAFLEDMKALGALDG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1307 544 Pfam WW domain binding protein 11 7 83 IPR019007 GO:0006396
Ssu6g1307 544 Coils Coil 13 33 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 291 306 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 267 289 - -
Ssu6g1307 544 Coils Coil 72 92 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 158 178 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 1 33 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 434 448 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 307 331 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 338 427 - -
Ssu6g1307 544 Pfam mRNA biogenesis factor 126 186 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 208 266 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 110 129 - -
Ssu6g1307 544 PANTHER WW DOMAIN-BINDING PROTEIN 11 251 543 IPR019007 GO:0006396
Ssu6g1307 544 PANTHER WW DOMAIN-BINDING PROTEIN 11 2 192 IPR019007 GO:0006396
Ssu6g1307 544 MobiDBLite consensus disorder prediction 488 524 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 91 524 - -
Ssu6g1307 544 MobiDBLite consensus disorder prediction 181 195 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1307 - - gmx:100792892 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1307 6 21343953 21349611 Ssu6g1307 6 21343953 21349611 ECH