Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1303 ATGCAGAATATGCTACGAGCAAAGCAGATCAGTACACTTTCTAGCGGTGCTAGGAGTTTTCTCATTGGTGGTTCACGTTGTAATGCAGCAGATGGTAGTTCATGCTCTTGCACTGAGGATGAAACTTGTGTGTCTAGACGACagcatataaaaaatgaagttttacCTGCACAGAAGCCATCCTCCTTAGTATCCAAAGCTACATCTGAAGTGAATGAAACATTGGTTTCAGCAAACTCAGTAAATGGACCAGCTTGCTGCAAGGCTGAGGGTGTTGATCAATCTGGCTATATTCAGCAAATCGTGCCTGCTTCAAGTCTATCAAGTAAATCAGATTCTGTAACATATGCTTGTGTTATTGATGGTGTTCAGGAACATGTTGGGCACTTACCTCCTCTTAATGCTGACCAGTTTTACAGGGCCGGTATTGCagctataaattttatttctgatTTAGTTAATTATAAGCTTCCTTTATCAAATGGAATGGAAATGCTAAGCTACTCTAAAAATTGTATGGTTGATACTGCCAGAACCCCACCCAACATCAGATCTTCAAATGTGAAACAGATTAAAAGGGAGAACTTTTCCAGTGTTCATCCAAGACCATCTGTTTCTACTGATTCAGGGTCTAAGCATACCAGTCATTATCATAGTGCAAAGTGTAAAGGTGATAAATCAAATTTAGGTAAAGGTTTTAAGCATATTCCTTCTTCTGGGACAGAGAAGTCAGTGGTGTCTCAAAATATTCCTTTAAATAATCATGAACACAGAGCCTTTCCACAGAGAACAAGAACGAAATCAAACCACTTTGTGACaaattttggttccaacatgcaTGCTTCAAACACACAGATGGTGGGATCAATCAAGGAAAGTTTCAATAAACATCCCAGGGATCTAAAAATGTCAGCTGGAACTGTTCCAATGAGCAGGCATTTTACAAACACAGGGCGTATTGTGGAAGTGGTTTCAGATATACTAAGGCAGTTAAAGTGGGGTCCTGCAGCTGAAAAGGCTCTGTATAACCTGAATTTTTCAATGGATGCATATCAAGCTAACCAAGTCTTGAAACAACTTCAAGACCACTCAGTTGCTCTTGGCTTTTTTTACTGGTTAAAGCAACAACCAGGCTTCAGGCATGATGGACACACTTACACCACCATGGTTGGTATCCTGGGCCGTGCTAGACGGTTTGATGTGATAAGCAAATTGCTAGAGCAGATGGTCAAGGATGGATGCCAACCCAATGTTGTAACATACAATCGCCTTATTCATTGCTATGGCTGTGCAAACTACCTGAAAGAAGCACTGAATGTGTTCAATGAAATGCAGGAGGTGGGATGTGAGCCTGATCGTGTCACATACTGTACACTCATTGATATTCATGCTAAAGCTGGATTTATTGATGTTGCCATGTCTATGTACAAAAGAATGCAAGCGGCTGGTCTTTCTCCTGACACGTTTACTTACAGTGTTATAATCAACTGTCTTGGAAAAGCTGGCAATTTAGCTGCTGCCCACTGGCTCTTTTGTGAGATGGTTGATCATGGTTGTGTTCCTAATCTGGTTACCTACAATATCATGATTGCCTTGCAAGCTAAAGCAAGGAATTATGAGACAGCATTGAAACTATATCATGACATGCAGAATGCAGGATTTCAACCTGACAAAGTTACTTATAGCATAGTAATGGAGGCACTTGGCCATTGTGGTTATCTTGAGGAAGCTGAATCAGTTTTTGTTGAGATGAAACAGAAAAACTGGGTGCCAGATGAACCTGTTTATGGTCTTTTAGTAGACTTGTGGGGAAAGGCTGGTAATGTTGAGAAGGCTTCGGAATGGTATCAGGCTATGCTGAATGCAGGTTTACTTCCAAATGTACCTACATGCAATTCCCTTCTCAGTGCATTCCTCAGGTTGCATCGATTGCTAGATGCATATAATCTTGTCCAAAGCATGGTGGCTCTTGGCCTTAGACCTTCTTTGCAAACTTATACTCTACTACTTAGTTGCTGTACAGAGGCACAGTCAGCACATACGGGATTTTTCAGTGAGCTTATGGCAGTTACTGGCCATCCTGCTCATGCATTTTTACTGTCTATGCCATCAGCAGGACCTGATGGTCAAAATGTGCGGGATCATGTGAGCAAATTCTTGGATATGATGCACACAGAGGATAGAGAGGGCAAAAGGGGGCTTGTAGATTCAGTGGTGAATTTTCTTCACAAGTCTGGGCTCAAGGAGGAGGCTGGTTCAGTTTGGGAGGCTGCTGCACAAAGGAATGTGTATCCGGATGCTGTCAAGGAGAAAAGCTCTCGCTATTGGCTTATCAATCTTCATGTCATGTCTGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTCGGTTTCGCCAACGGATGCTGATATCCGGGATTTGCCCTAGTCGGATAGACATTATCACAGGATGGGGTCGTAGGAGCAAGGTGACAGGATCTTCTCTGGTGAGACAGGCAGTGCGGGACCTGCTGCACACATTCAGTTTCCCATTTTTGGCTGAAAAGGGCAATTCAGGGTGTTTTGTGGGATGTGGGGAGCCTCTTTGTCGATGGTTGCACCACTCTTATGTGGAAAGGATGCATTTGCTGTAG 2637 0.4202 MQNMLRAKQISTLSSGARSFLIGGSRCNAADGSSCSCTEDETCVSRRQHIKNEVLPAQKPSSLVSKATSEVNETLVSANSVNGPACCKAEGVDQSGYIQQIVPASSLSSKSDSVTYACVIDGVQEHVGHLPPLNADQFYRAGIAAINFISDLVNYKLPLSNGMEMLSYSKNCMVDTARTPPNIRSSNVKQIKRENFSSVHPRPSVSTDSGSKHTSHYHSAKCKGDKSNLGKGFKHIPSSGTEKSVVSQNIPLNNHEHRAFPQRTRTKSNHFVTNFGSNMHASNTQMVGSIKESFNKHPRDLKMSAGTVPMSRHFTNTGRIVEVVSDILRQLKWGPAAEKALYNLNFSMDAYQANQVLKQLQDHSVALGFFYWLKQQPGFRHDGHTYTTMVGILGRARRFDVISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQAAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVDHGCVPNLVTYNIMIALQAKARNYETALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMKQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLLDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQSAHTGFFSELMAVTGHPAHAFLLSMPSAGPDGQNVRDHVSKFLDMMHTEDREGKRGLVDSVVNFLHKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGTAVTALSRTLARFRQRMLISGICPSRIDIITGWGRRSKVTGSSLVRQAVRDLLHTFSFPFLAEKGNSGCFVGCGEPLCRWLHHSYVERMHLL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Ssu6g1303 878 Gene3D - 754 857 IPR036063 -
Ssu6g1303 878 SMART SMR_2 775 867 IPR002625 -
Ssu6g1303 878 MobiDBLite consensus disorder prediction 179 229 - -
Ssu6g1303 878 Gene3D Tetratricopeptide repeat domain 468 619 IPR011990 GO:0005515
Ssu6g1303 878 Gene3D Tetratricopeptide repeat domain 336 467 IPR011990 GO:0005515
Ssu6g1303 878 Gene3D Tetratricopeptide repeat domain 620 687 IPR011990 GO:0005515
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 595 628 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 384 418 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 630 662 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 524 557 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 419 452 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 489 522 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 454 488 IPR002885 -
Ssu6g1303 878 TIGRFAM PPR: pentatricopeptide repeat domain 559 593 IPR002885 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Ssu6g1303 878 Pfam PPR repeat 483 515 IPR002885 -
Ssu6g1303 878 Pfam PPR repeat family 521 568 IPR002885 -
Ssu6g1303 878 Pfam PPR repeat family 626 673 IPR002885 -
Ssu6g1303 878 Pfam PPR repeat family 416 462 IPR002885 -
Ssu6g1303 878 MobiDBLite consensus disorder prediction 179 213 - -
Ssu6g1303 878 Pfam PPR repeat 595 623 IPR002885 -
Ssu6g1303 878 Pfam PPR repeat 385 414 IPR002885 -
Ssu6g1303 878 PANTHER BNAA07G31720D PROTEIN 4 878 - -
Ssu6g1303 878 PANTHER OS03G0856100 PROTEIN 4 878 - -
Ssu6g1303 878 MobiDBLite consensus disorder prediction 214 229 - -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Ssu6g1303 878 ProSiteProfiles Smr domain profile. 778 859 IPR002625 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Ssu6g1303 878 SUPERFAMILY SMR domain-like 776 856 IPR036063 -
Ssu6g1303 878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1303 Ssu-Chr6 21261866 21265639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1303 434 751 Glycosyltransferase AT1G05670 24.611 2.41e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1303 - - gmx:100785113 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1303 6 21261866 21265639 Ssu6g1303 6 21261866 21265639 ECH