Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1299 ATGACATTTCTAAAGACTGGTTTAGGTTTATTGTTGGTAGGAGCTGCAGGGATCCGACCATGTAACTTAGCATTTGGAGCTGATCAGTTTAATCCTAACACAGATTCTGGGAAAAAGGGGATTAATAGCTTCTTCAATTGGTACTTTTTCACCTTCACTGTTGCTCAGTTGATATCCTTAACAATTATTGTCTATATACAGTCAAATGTAAGTTGGGCAGTGGGTCTGGGAATTCCTGCAGCGTTGATGTTTTTATCTTCTATAATATTCTTCATGGGGGCCAAAATGTATGTGAAAATTAAACCAAGTGGTAGCCCTATAACTAGTATAGTGCAAGTTATAGTGGTTGCAACAAAGAAAAGGAGGCTGAAGCTCCCAGATTATCAATATCCTTCCCTCTTCAACTATGTGCCTCCCAAGTCAATGAATTCTAAACTTCCCTATACATATCAATTCAGGTTCCTTGACAAAGCTGCGGTCATGACTCCCCAAGATCAAATAAATCCCAATGGATCTGCTACTGATCCCTGGAATCTTTGCAGTATGCAGCAAGTGGAAGAGGTTAAATGCTTGTTGAGAGTGTTACCCATATGGGTTTCTGGCATTTTGTACTTTGTTGTTATCGTCCAACAGCACACCATTTTAGTGTTCCAAGCCCTTCTATCTGACAGGCGTGTTGGGCAAAGCAAGTTCTTGATCCCAGCAGCATCCTACTACGTCTTTCTCATGATTAGTGTGGCAATTTGGTTACCCATGTATGACCGAAAAGTTGTGCCTTTACTCCAAAGGCTCACTGGAAAAGAGGGTGGCATCACACTCCTTCAGAGGATGGGCATTGGCATATTTTTCTCCATACTCAGCATGCTAGTATCTGCTAGGGTTGAACAGCACCGTAGAACTCTGGCTCTGATTAAACCTCTAGGAGTGGAAACAAGAAAAGGTGCAATCTCATCAATGTCAGGTCTGTGGCTGATTCCTCAGCTGACATTGGCTGGACTGGCTGAAGCATTCATGTCTGTTGCACAAGTTGAATTTTACTACAAACAATTTCCTGAGAACATGAGAAGCATTGCAGGTTCTCTTTACTACTGTGGCCATGCAGGGTCAAGTTATTTGAGTAGTCTGCTTATTTCAGTTATCCACCAAATCACTGCCACATCTGAAACTGGGAATTGGTTACCGGAGGATCTGAACAAGGGGAGATTGGATAACTTCTATTGCCTCATTGCTGCTCtagaaattatgaatttatgttaCTTTGTGTTGTGTGCAAGGTGGTTTAGGTACAAAGGGACGGGCAGTAGTTCCATTGAACTTGAAAAAGTGACAAAACAATCGGAAAGAAGTGCAAATGGTGTTAGTGATTCGAGTCTATAG 1377 0.4147 MTFLKTGLGLLLVGAAGIRPCNLAFGADQFNPNTDSGKKGINSFFNWYFFTFTVAQLISLTIIVYIQSNVSWAVGLGIPAALMFLSSIIFFMGAKMYVKIKPSGSPITSIVQVIVVATKKRRLKLPDYQYPSLFNYVPPKSMNSKLPYTYQFRFLDKAAVMTPQDQINPNGSATDPWNLCSMQQVEEVKCLLRVLPIWVSGILYFVVIVQQHTILVFQALLSDRRVGQSKFLIPAASYYVFLMISVAIWLPMYDRKVVPLLQRLTGKEGGITLLQRMGIGIFFSILSMLVSARVEQHRRTLALIKPLGVETRKGAISSMSGLWLIPQLTLAGLAEAFMSVAQVEFYYKQFPENMRSIAGSLYYCGHAGSSYLSSLLISVIHQITATSETGNWLPEDLNKGRLDNFYCLIAALEIMNLCYFVLCARWFRYKGTGSSSIELEKVTKQSERSANGVSDSSL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1299 458 Pfam POT family 3 392 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1299 458 Gene3D MFS general substrate transporter like domains 1 434 IPR036259 -
Ssu6g1299 458 SUPERFAMILY MFS general substrate transporter 7 428 IPR036259 -
Ssu6g1299 458 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT 1 441 - -
Ssu6g1299 458 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 441 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1299 Ssu-Chr6 21087068 21088527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1299 1 449 Organic Solute Cotransporters AT5G62680 59.823 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1299 - - gmx:100798182 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1299 6 21087068 21088527 Ssu6g1299 6 21087068 21088527 ECH