Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1294 ATGGAAGAAGCACAGCTGCACGTATGGGAAGGGTATGTAGACTGGAGGAACAGACCAGCCATAAGAGGACACCATGGTGGCATGCTTGCTGCTTCCTTCGTTTTGACTGCTGAGGTATTGGAGAACCTAGCATATCTTGCCAATGCAAGCAACCTTGTTTTGTATCTGTCCAAGTTTATGCACTTTTCACCATCCACCTCTGCCAGCATTGTCACCGACTTCATGGGAACAGCCTTCCTCCTTGCCATTCTTGGTGGATTTCTGGCTGATGCCTTTATCACCACTTATTCCATCTATCTCATAAGTGCTGCAATAGAATTCATGGGTTTATTAATGCTCACAATACAAGCTCACAAACCATCACTCAAACCACCAAACTGCGTTATGGGAAACACCGACAGTCCATGCCATGAAATTCATGGTGGGGACGCAGTCATGCTATTTGCAGGTCTCTATCTTGTGGCTGTGGGCGTAGGAGGTATAAAAGGTGCTCTTCCTCCTCATGGGGCTGACCAGTTTGATGAGAACACCCCAGAGGGAAGGAAGCAGAGATCTGcatttttcaattactttgtttTCAGCCTGTCATGTGGAGCATTAATTGCAGTAACTTTTGGGGTATGGATTGAAGACAACAAGGGATGGCAGTGGGGTTTAGGAGTCTCAACTGCATCAATACTGCTCTCCATTCCAGTGTTTCTTCTTGGTTCACACAAGTACAGGACCAAAATTCCAGCAGGAAGCCCCATCACTTCCATGTTCAAGGTTCTTGTTGCAGCAATTTGCAACAACTGCAAAGCCAGGAATTCAAGCAATGATGTAATAAGCATGGCTACAAGTCCATCCTATACAACTGAAAGGGAAGTTGGAGAAGAAAGTAACACTAGAAAAGGGGTGCTAGGCCAAACTCTAACTGAGAACCTTAAATTCCTTAACAAAGCAGTGACGGAACCAGTTCACCCAATTTTAGAGTGCACAGTAAAGGAAGTGGAAGAGGTCAAGATTGTGATAAGAATTCTTCCCATATTGATGTCCACCATAATGCTAAACTGCTGCCTAGCTCAGCTATCTACCTTCTCAGTCCAACAGTCAGCCACTTTGAACACCATGCTTGGTTCCTTCAAGGTCCCACCAGCTTCTCTACCTGTGTTCCCTGTCCTCTTCATCATGATCCTTGCCCCACTCTACAACCACATCATTATTCCATTTGCTAGAAAAGTAACCAAAACTGAAATGGGGATCGCATATCTACAAAGAATAGGGACAGGCCTGTTTCTCTCTATTGTGGCAATGGCTGTGGCAGCTTTGGTAGAAACCAAGAGAAAGAAAGCAGCTGCTAAGTTTGGTTTGTTAGACTCAGCCAAACCCCTCCCCATAACATTCCTTTGGGTGGCCttacaatacatttttcttggTTCAGCTGATCTTTTCACTTTGGCTGGCATGATGGAGTTCTTCTTCACAGAGGCACCATGGAGCATGAGGTCTTTGGCCACAGCCCTTTCCTGGGCCTCGCTGGCCATGGGATACTTCCTCAGCACAGTTCTTGTGTCCACCATCAATAAGGTCACAGGAGCTTTTGGACACACACCATGGCTCTTGGGTGCCAACTTGAATCATTACCACCTAGAGAGGTTTTACTGGTTGATGTGTGTGCTTAGTGGActcaatttcattcattttctcttctggGCCAATTCCTACAAATACAGATATTCAACAGAGCCCGGATACTAG 1737 0.4439 MEEAQLHVWEGYVDWRNRPAIRGHHGGMLAASFVLTAEVLENLAYLANASNLVLYLSKFMHFSPSTSASIVTDFMGTAFLLAILGGFLADAFITTYSIYLISAAIEFMGLLMLTIQAHKPSLKPPNCVMGNTDSPCHEIHGGDAVMLFAGLYLVAVGVGGIKGALPPHGADQFDENTPEGRKQRSAFFNYFVFSLSCGALIAVTFGVWIEDNKGWQWGLGVSTASILLSIPVFLLGSHKYRTKIPAGSPITSMFKVLVAAICNNCKARNSSNDVISMATSPSYTTEREVGEESNTRKGVLGQTLTENLKFLNKAVTEPVHPILECTVKEVEEVKIVIRILPILMSTIMLNCCLAQLSTFSVQQSATLNTMLGSFKVPPASLPVFPVLFIMILAPLYNHIIIPFARKVTKTEMGIAYLQRIGTGLFLSIVAMAVAALVETKRKKAAAKFGLLDSAKPLPITFLWVALQYIFLGSADLFTLAGMMEFFFTEAPWSMRSLATALSWASLAMGYFLSTVLVSTINKVTGAFGHTPWLLGANLNHYHLERFYWLMCVLSGLNFIHFLFWANSYKYRYSTEPGY 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1294 578 PANTHER PROTEIN NRT1/ PTR FAMILY 4.7 11 573 - -
Ssu6g1294 578 CDD MFS_NPF4 28 565 - -
Ssu6g1294 578 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 11 573 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1294 578 Pfam POT family 100 533 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1294 578 Gene3D MFS general substrate transporter like domains 2 575 IPR036259 -
Ssu6g1294 578 SUPERFAMILY MFS general substrate transporter 46 565 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1294 Ssu-Chr6 20995364 20998684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1294 3 571 Organic Solute Cotransporters AT1G69850 65.749 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1294 - K14638 gmx:100796577 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1294 6 20995364 20998684 Ssu6g1294 6 20995364 20998684 ECH