Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1293 ATGGGGAGTCTTTTGTGTTGTGTGAAAGTTGAGCAATCTACAGTGGCTGTAAAAGAAAGATTTGGACGATTTGAGAAGGTGCTTGAGCCGGGATGCCATTGCATGCCATGGTTCCTTGGAAAACAACTTGCTGGTCATCTCTCTCTTCGTCTACAGCAATTGGATCTTCGATGTGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCTATTCAATATCGAGCCCTGGCGGAGAAGGCCAATGATGCTTTTTACAAACTTAGCAATACAAAGACCCAAATTCAAGCTTATGTTTTTGATGTAATTAGGGCAAGTGTTCCAAAACTCAACTTGGATGATGCTTTTGagcagaaaaatgaaattgccAAAGCTGTGGAAGAAGAACTtgagaagGCTATGTCGGCTTATGGGTATGAAATTGTTCAAACACTGATTGTTGATATAGATCCAGATGAGCATGTGAAGCGGGCTATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATCTTGCTAATTAAAAGAGCTGAGGGTGAGGCCGAGTCTAAATATCTCTCTGGGCTGGGTATTGCTCGCCAACGTCAAGCAATTGTGGATGGCTTGAGAGACAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACGACTCCAAAAGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACTATGAAAGAAATTGGCGCTGCCTCCAAGTCTTCTGCTGTGTTCATTCCACACGGACCTGGTGCTGTTCGTGATGTAGCTAGCCAAATTCGTGAGGGACTTCTTCAGGCTTCTCACGAGTAG 855 0.4269 MGSLLCCVKVEQSTVAVKERFGRFEKVLEPGCHCMPWFLGKQLAGHLSLRLQQLDLRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTKTQIQAYVFDVIRASVPKLNLDDAFEQKNEIAKAVEEELEKAMSAYGYEIVQTLIVDIDPDEHVKRAMNEINAAARLRLAANEKAEAEKILLIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTTPKDVMDMVLVTQYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIREGLLQASHE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1293 284 Pfam SPFH domain / Band 7 family 9 182 IPR001107 -
Ssu6g1293 284 Gene3D Band 7 domain 42 167 IPR036013 -
Ssu6g1293 284 Coils Coil 114 138 - -
Ssu6g1293 284 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 3 1 283 - -
Ssu6g1293 284 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 283 - -
Ssu6g1293 284 SMART PHB_4 5 165 IPR001107 -
Ssu6g1293 284 CDD SPFH_like_u4 10 278 - -
Ssu6g1293 284 SUPERFAMILY Band 7/SPFH domain 46 171 IPR036013 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1293 Ssu-Chr6 20966082 20968360 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1293 - - gmx:100804982 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1293 6 20966082 20968360 Ssu6g1293 6 20966082 20968360 ECH