Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1290 ATGCAAATTGTGCAAATTATAACATTCACGTTTCTTCAACACCAATTTCTTGCAATCTTGAGGTTCATATTAGTTTTTAGTTCGTCCTCAATGGCCAGTGCTAGGGGTACTACAAGGGTTGGAGTAAGAACGAGGGCACGAACTCCAGTTGCTGAAGAGATAGTACCTAATTCTGGATGGACAGAGGACTCTGCGGGCCATTACCTTCTAGTGGATCTTCCCGAATTCAGGAAGGAAGAGGTGAAGCTCCAGGTTGACAGCTATGGCCGTATTCTTGTAACAGGAGAAAGGCAAGTAAATGAGTGGAAACGTGTTCATTTTCGGCTGACTTTTCCAGAACCAGTGGGCTCTGATATGGATAAGATAACTGGAAAGTTTGATGGTGGAATCCTTTATGTCACTGTCCCCAAGCAAGTAACACAACAGAACAAAGAAAGTGAGACTGTGAAAGCTGGAAATGGCGAAGTTGAAAGAGCAGAAGAAAATGATAGCCATGCACCAAATGCTCATGAGGGAAGGAGAGATCCCAGTCAACATGACAATCATAGAGAGCaagaagtaaaaagaaatgaaaatgagCACATTGGAGATTTTCCTGAACAAGTAATAAGGAAGTGGGATCAAGAATCCATGTTAAGGAGTACAGCGGGGGTTTTgaggaaaaacaaaagaatagtCATAACAGCTGTAATAGCCTTTTCCTTGGGGTTGTTAGTATCTCGCAAATTCAACAGCACCATAAATTAA 747 0.4016 MQIVQIITFTFLQHQFLAILRFILVFSSSSMASARGTTRVGVRTRARTPVAEEIVPNSGWTEDSAGHYLLVDLPEFRKEEVKLQVDSYGRILVTGERQVNEWKRVHFRLTFPEPVGSDMDKITGKFDGGILYVTVPKQVTQQNKESETVKAGNGEVERAEENDSHAPNAHEGRRDPSQHDNHREQEVKRNENEHIGDFPEQVIRKWDQESMLRSTAGVLRKNKRIVITAVIAFSLGLLVSRKFNSTIN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1290 248 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 49 152 IPR002068 -
Ssu6g1290 248 MobiDBLite consensus disorder prediction 141 196 - -
Ssu6g1290 248 SUPERFAMILY HSP20-like chaperones 53 143 IPR008978 -
Ssu6g1290 248 Pfam Hsp20/alpha crystallin family 61 148 IPR002068 -
Ssu6g1290 248 PANTHER INACTIVE PROTEIN RESTRICTED TEV MOVEMENT 2-LIKE 41 244 - -
Ssu6g1290 248 MobiDBLite consensus disorder prediction 150 196 - -
Ssu6g1290 248 PANTHER HEAT SHOCK PROTEIN 26 41 244 IPR045045 -
Ssu6g1290 248 CDD ACD_sHsps-like 60 137 - -
Ssu6g1290 248 Gene3D - 25 150 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1290 Ssu-Chr6 20947613 20948688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1290 - - gsj:114393693 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1290 6 20947613 20948688 Ssu6g1290 6 20947613 20948688 ECH