Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1257 ATGGCAGCGGCACCAGCAGCTACCTTCGCTATTGGAACCACCGGTTCCCCTAGCCAAAGAGGAAGCTCACTTCCTCAATCAAAGTCTTTTGGGTTGAGATTCAAGTCCCAGAATCATTTGAAGAGTTTCTGTGGCCTCAAGGCCATGTCATCTGTGAGATGTGACTCAGAATTATCGTTCTTCGGTGACAAAACTGGTGCTGCTCTGCGGGCATCTTTTGCATCCAAAGCTCAAAAGGCAAACCAAAACTTCAACTACAACTTGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAGCCGCTGGCGCTTCTCGTCAAGATGTCCCCGTTAGTTTCCGACCTGCATCTCTATGATATTGCAAATGTCAAGGGAGTTGCTGCTGATCTCAGTCACTGCAACACACCCTCACAAGTCAGGGATTTCACAGGAGCTTCTGAGTTGGTGAATTGTCTGAAAGGCGTGGATGTTGTTGTCATACCCGCCGGTGTTCCAAGGAAGCCGGGGATGACTCGTGATGACCTTTTCAACATCAATGCCGGCATAGTCAGGGACTTGGTTTCTGCTGTTGCAGATAATTGCCCCGGTGCTTTTATTCACATTATCAGTAACCCTGTGAACTCTACGGTGCCCATTGCCACAGAAGTTTTGAAGCAGAAGGGTGTCTATGATCCTAAAAAGCTCTTTGGTGTCACCACGCTGGATGTTGTGAGGGCAAACACGTTTGTTGCTCAGAGGAAGAACCTGAAGCTGATTGATGTCGATGTCCCAGTTGTTGGGGGCCATGCTGGAATTACCATTCTTCCTCTCTTGTCAAAGACAAGACCCTCAGTGAGCTTCACTGATGAAGAAGTTGAGGAGTTAACTGTCAGGATTCAAAACGCCGGAACTGAAGTAGTTGAAGCAAAGGCGGGTGCAGGGTCTGCTACCTTGTCAATGGCATATGCAGCAGCTAGGTTTGTTGAATCGTCTCTTCGCGCGCTTGATGGAGATGGGGATGTGTATGAGTGCTCATTTGTGCAATCAGATTTGACTGACCTCCCATATTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGAGTTGAGGCTTTAATTCCATCTGATCTCCAAGGGTTGACTGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAAGTGTTGCTGCTTAA 1239 0.4818 MAAAPAATFAIGTTGSPSQRGSSLPQSKSFGLRFKSQNHLKSFCGLKAMSSVRCDSELSFFGDKTGAALRASFASKAQKANQNFNYNLQPQASYKVAVLGAAGGIGQPLALLVKMSPLVSDLHLYDIANVKGVAADLSHCNTPSQVRDFTGASELVNCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIHIISNPVNSTVPIATEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEEVEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVQSDLTDLPYFASRVKLGRKGVEALIPSDLQGLTEYEQKALEALKPELKASIEKGIAFAQKQSVAA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1257 412 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 95 406 IPR010097 GO:0006099|GO:0030060
Ssu6g1257 412 PANTHER MALATE AND LACTATE DEHYDROGENASE 26 412 - -
Ssu6g1257 412 Pfam lactate/malate dehydrogenase, NAD binding domain 95 237 IPR001236 GO:0016491
Ssu6g1257 412 CDD MDH_glyoxysomal_mitochondrial 94 405 IPR010097 GO:0006099|GO:0030060
Ssu6g1257 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 238 IPR036291 -
Ssu6g1257 412 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 26 412 - -
Ssu6g1257 412 SUPERFAMILY LDH C-terminal domain-like 238 405 IPR015955 GO:0003824|GO:0016616
Ssu6g1257 412 Gene3D - 92 238 - -
Ssu6g1257 412 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 239 404 IPR022383 GO:0016616
Ssu6g1257 412 Gene3D - 239 410 IPR015955 GO:0003824|GO:0016616
Ssu6g1257 412 ProSitePatterns Malate dehydrogenase active site signature. 238 250 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1257 Ssu-Chr6 20437609 20438847 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1257 K00026 - gmx:100783173 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1257 6 20437609 20438847 Ssu6g1257 6 20437609 20438847 ECH