Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1252 ATGAGGCAAATGAGTGTTGCTTCTGGTTCGAGTAGAAAGGGGAGGTCGGCGTCACCACTGAAGGACCGATCCAAAACCTCTTCGTCTAAGTTGTCTTCTTCATCCAAACGAAGCACCTCACCCTCTGCCACTCTCCTCGACGTCGACAATGACGCCACCTCTCTCTTTCACGATTACCCTAACCCTAACCCTCGGAGCTTCTCCCACAAAGTCAAACAGCAATGCTGGGAAAAGGCCGACAAGGTCAAAGGACGAGACCCCGAGCGCTGGCGCAGGGACACCCTTGGCAACATTGTCTTCCGCAAACTCCTAGGTTGCCCTGGTTGTCTCTGTCACGACTACGATCACGTTATCCCTTACTCTAAGGGGGGAGAAAGCACGCTGGAAAACTGTCAAGTATTACAGGCAACAGTTAACCGTGCAAAGGGTAATCGAACAGAGATCTCCAAAGCTGAACTTATTCAGAAGAGTTCTTATTGCAGGGTTTCAgATCGTGATATGGATCTTCTGGAACTGACAGCCTATGGCAATGTCCAGCGTGGACCAGATTCTGGGGGATGTAGAATCCAATGA 573 0.5026 MRQMSVASGSSRKGRSASPLKDRSKTSSSKLSSSSKRSTSPSATLLDVDNDATSLFHDYPNPNPRSFSHKVKQQCWEKADKVKGRDPERWRRDTLGNIVFRKLLGCPGCLCHDYDHVIPYSKGGESTLENCQVLQATVNRAKGNRTEISKAELIQKSSYCRVSDRDMDLLELTAYGNVQRGPDSGGCRIQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1252 190 MobiDBLite consensus disorder prediction 1 46 - -
Ssu6g1252 190 SMART HNH_5 94 140 IPR003615 -
Ssu6g1252 190 Gene3D - 67 165 - -
Ssu6g1252 190 PANTHER HNH ENDONUCLEASE 13 190 - -
Ssu6g1252 190 Pfam HNH endonuclease 112 145 IPR002711 GO:0003676|GO:0004519
Ssu6g1252 190 PANTHER HNH ENDONUCLEASE 13 190 - -
Ssu6g1252 190 CDD HNHc 98 143 IPR003615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1252 Ssu-Chr6 20345812 20348053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1252 - - gmx:100500174 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1252 6 20345812 20348053 Ssu6g1252 6 20345812 20348053 ECH