Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1247 ATGGCTGCAACTTCTTCCTTCTGTTCATCGACCCTCCAATCCCAAATCAATGGGCTCTACCTTCACAAAACCTCTCTCTTCCATCCTCGTTCCCTCACTTTCTCCAGGAGGAAAATTTCAACCACGGTGAAGGCTTCATCTCGTGttgacaaattttcaaaaagcgATATCATTGTTTCTCCGTCcattctttcctctaactttGCAAAATTGGGAGAACAGGTGAAAGCAGTGGAGTTGGCTGGTTGTGATTGGATTCATGTTGATGTGATGGATGGTCGCTTTGTTCCAAATATTACAATTGGACCTCTAGTGGTTGATGCATTGCGCCCTGTGACAGATCTTCCTTTGGATGTACACCTGATGATTGTAGAGCCTGACCAAAGGGTGCCAGATTTTATCAAGGCAGGAGCTGATATAGTCAGTGTTCATTGTGAACAATCTTCAACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCTTAAACCCTGCTACCCCCTTAAGTGCAATAGAATATGTCCTTGATGTGGTTGATTTGGTCTTAATCATGTCCGTAAACCCTGGATTTGGTGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAAATTTCTGATTTGAGAAGATTGTGCGCGGAGAAGGGAGTGAATCCATGGATTGAAGTAGATGGTGGAGTTGGTCCAGGAAATGCTTACAAGGTGATTGAGGCTGGAGCCAATGCACTAGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAgCTATAAGAGGAATCAAAACCAGCAAAAGACCTGAAGCAGTTGCTGTGTGA 843 0.4187 MAATSSFCSSTLQSQINGLYLHKTSLFHPRSLTFSRRKISTTVKASSRVDKFSKSDIIVSPSILSSNFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPATPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPGNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1247 280 Hamap Ribulose-phosphate 3-epimerase [rpe]. 56 272 IPR026019 GO:0004750|GO:0006098
Ssu6g1247 280 SUPERFAMILY Ribulose-phoshate binding barrel 51 273 IPR011060 -
Ssu6g1247 280 Pfam Ribulose-phosphate 3 epimerase family 59 257 IPR000056 GO:0005975|GO:0016857
Ssu6g1247 280 TIGRFAM rpe: ribulose-phosphate 3-epimerase 59 270 IPR026019 GO:0004750|GO:0006098
Ssu6g1247 280 CDD RPE 58 270 IPR000056 GO:0005975|GO:0016857
Ssu6g1247 280 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 16 267 IPR000056 GO:0005975|GO:0016857
Ssu6g1247 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 190 212 IPR000056 GO:0005975|GO:0016857
Ssu6g1247 280 Gene3D Aldolase class I 47 276 IPR013785 -
Ssu6g1247 280 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 86 100 IPR000056 GO:0005975|GO:0016857
Ssu6g1247 280 PANTHER - 16 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1247 Ssu-Chr6 20268859 20273204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1247 K01783 - gmx:100786514 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1247 6 20268859 20273204 Ssu6g1247 6 20268859 20273204 ECH