Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1244 ATGGGTCCTCCTCCCGTTGAAGATCGATCCGAGATAGTGTTCTTCGATGTGGAGACCAGCGTTCCGACCCGACCCGGCCAGGGTTTTGCAATTCTGGAATTCGGAGCCATATTGGTTTGCCCCAGGAAGCTGACGGAGCTCCGGAGTTACTCCACTCTGGTCCGGCCCGCCGACCTCTCCGTCATCTCGCCCTTGTCGGAGCGCTGCAACGGCATCACCGCCGACGCCGTCGCTGCCTCTCCCACTTTCGCCGACATTTCTCACCTCGTTTACGACCTTCTTCACgGGAGGATTTGGGCGGGTCATAATATCATAAGATTCGACTGTGTTCGGATCAGAGATGCATTTGCTGAGATTAAGCAGCCGCCACCTGAACCTAAGGGGACCATTGACTCTCTATCTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTGACATGAAGATGGCTACTCTTGCAACTTATTTTGGGCTTGGACGTCAGACACATAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACTGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACTGCAAATAGTTGGGTTTCACCAAATGCTACCACAAGAAGCCGCAGTAATGGGAAATATCCATCACAGAGggacttattaaatattaataaggaTTCTGTATTATCATCTCCTGCAACTGAATCCAAAGACAAAAGTCATCCAATACTTTCTTTTGCAATGAGCAGCCCAAAAAGGGATGTCCCAAATATTGCAGTTGCAGATCCTAATATAGTTCAATCGGATCCTTTTGACTTTCGTGGTCTTCAggatgaaataaaaagaaaaaccattAAGTCAGATGTTGCCATGGAGGAAAAACCCATGCAAGAGTCACCTGATTTGGCTTCCTCATCTTCTGTATCCCAGCCTTGCGGCAGCTCTATTGTTGTTTTAGAGCCTGATGGAATATGTATCCCTTCTATTGATGCATCTCTTGTTCCATCATTTCGTGGCAGTCAAAGGATAGAATTACTGCATGAAGGTTTCCTGTTTCAGCTTCATTGTACTGATTTGAAAGTGCGGTTTGGAATAAACACAAAGTTTGTTGATAATGCTGGCCGGCCACGATTGAGTTTTGTGGTTGATCCATCACCAAGTCTATGTAATGTTCTTGATGCATGTGACCGTGTAGTACAGAAGTTAACCTTGGATTCTGGTAGCAGCTCCGATTGGAGGCCTGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTGTCAGATTGCACATACCAACAGCAGTAGTGGCAGACGTTGCTATTTATGCTACAGAAATATATCAAAGAGAATCGTCTGGAGCAGTGCAAAGACTTCTCTTCAGTAAGTTTGATGCTGCAGAACTTGGTTCCTTGTTCATGCCTGGGACATTTGTTGATGCCTTCTTCTCCTTAGATCCGTATGACTATCAGCAGAATGCAGGGATTAAATTAGTTGCCAAAAAATTGATCATTCATTGCAAATAG 1524 0.439 MGPPPVEDRSEIVFFDVETSVPTRPGQGFAILEFGAILVCPRKLTELRSYSTLVRPADLSVISPLSERCNGITADAVAASPTFADISHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEIKQPPPEPKGTIDSLSLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTANSWVSPNATTRSRSNGKYPSQRDLLNINKDSVLSSPATESKDKSHPILSFAMSSPKRDVPNIAVADPNIVQSDPFDFRGLQDEIKRKTIKSDVAMEEKPMQESPDLASSSSVSQPCGSSIVVLEPDGICIPSIDASLVPSFRGSQRIELLHEGFLFQLHCTDLKVRFGINTKFVDNAGRPRLSFVVDPSPSLCNVLDACDRVVQKLTLDSGSSSDWRPVVIRKEGFFNYPTVRLHIPTAVVADVAIYATEIYQRESSGAVQRLLFSKFDAAELGSLFMPGTFVDAFFSLDPYDYQQNAGIKLVAKKLIIHCK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1244 507 CDD DEDDh 13 177 - -
Ssu6g1244 507 SUPERFAMILY Ribonuclease H-like 11 181 IPR012337 -
Ssu6g1244 507 Pfam Exonuclease 13 176 IPR013520 -
Ssu6g1244 507 Gene3D - 7 183 IPR036397 GO:0003676
Ssu6g1244 507 PANTHER PROTEIN NEN3 7 506 - -
Ssu6g1244 507 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 7 506 - -
Ssu6g1244 507 SMART exoiiiendus 11 185 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1244 Ssu-Chr6 20246777 20249933 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1244 - - ccaj:109808157 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1244 6 20246777 20249933 Ssu6g1244 6 20246777 20249933 ECH