Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1242 ATGGGGCAAGAGAACCACCACAAGCGCAGCAGCAGCGCGGGTCTGCCGACCTCTCGAAGCCGCGGCGGCCCGCTTCCCCGGGGGCGCCAGATCCAGAAGACGTTCAACAACATAAAGATCACCATCCTGTGCGGCTTCGTCACCATCCTCGTCCTCCGCGGCACCATCGGCGTCAACCTCGGCTCCTCCGACGCCGACGCCGTCAACCAGAACCTCATCGAGGAGACCAACCGCATCCTCGCCGAGATCCGATCCGACGCCGACCCCTCCGATCCGGACGACCAGGCCCCCTTCAACCCCAACGCCACCTTCACCCTCGGCCCCAAGATCCTCAACTGGGACCACGAGCGCAAGGCCTGGCTCAACCAAAACCCCGAATACCCTAACCTCGTCAGAGGTAAACCCCGCATCTTGCTCCTCACTGGGTCCCCCCCTAAGCCCTGTGACAACCCTATCGGGGATCATTACTTGTTGAAGTCCATTAAGAACAAGATTGATTACTGTAGATTACACGGGATTGAGATTGTCTATAATTTGGCACATTTGGATGTTGAGCTTGCCGGGTACTGGGCCAAATTGCCCATGATTCGGAGGTTGATGGTGTCGCACCCTGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCTTTTTTCACTGATATGGTGTTTCAGCTTCCTTTGTCTAAGTACGATGAGTACAATTTGGTTCTTCATGGATACCCTGATTTGTTGTTTGAGCAGAAGTCCTGGATTGCGGTGAACACTGGGAGTTTTCTGTTTAGGAATTGTCAGTGGTCTTTGGACTTGCTTGACGATTGGGCTCCCATGGGCCCCAAGGGGCCCGTTCGCGAGGAGGCCGGCAAGATCTTGACGGCGAATCTCAAGGGGAGGCCGGCGTTCGAGGCCGATGATCAGTCCGCATTGATATATTTGTTGCTGTCGAAGAAGGACAAGTGGATGAATAAGGTGTTTCTTGAGAATTCCTACTATTTGCACGGTTACTGGGCAGGGTTGGTTGATCGGTATGAGGAGATGATTGACAAGTATCATCCGGGGTTGGGGGATGAGAGGTGGCCGTTTGTGACGCATTTTGTCGGGTGTAAGCCGTGTGGGAGCTACGGGGATTATCCCGTGGAGAGGTGTCTGAGTAGCATGGAGAGGGCTTTCAATTTTGCTGACAATCAGGTGCTCAAACTCTATGGGTTCAGCCACCGCGGTCTGTTGAGTCCCAAGATCAAGAGAATCAGAAATGAGACCGTTTCTCCTTTGGAGTTTGTAGACCAGTTTGATATTCGAAGACATCCTACAGAAAGCAGTGAATCGAAGAGCTAG 1332 0.5345 MGQENHHKRSSSAGLPTSRSRGGPLPRGRQIQKTFNNIKITILCGFVTILVLRGTIGVNLGSSDADAVNQNLIEETNRILAEIRSDADPSDPDDQAPFNPNATFTLGPKILNWDHERKAWLNQNPEYPNLVRGKPRILLLTGSPPKPCDNPIGDHYLLKSIKNKIDYCRLHGIEIVYNLAHLDVELAGYWAKLPMIRRLMVSHPEVEWIWWMDSDAFFTDMVFQLPLSKYDEYNLVLHGYPDLLFEQKSWIAVNTGSFLFRNCQWSLDLLDDWAPMGPKGPVREEAGKILTANLKGRPAFEADDQSALIYLLLSKKDKWMNKVFLENSYYLHGYWAGLVDRYEEMIDKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSMERAFNFADNQVLKLYGFSHRGLLSPKIKRIRNETVSPLEFVDQFDIRRHPTESSESKS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1242 443 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 3-RELATED 9 436 - -
Ssu6g1242 443 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 133 279 IPR029044 -
Ssu6g1242 443 Pfam galactosyl transferase GMA12/MNN10 family 134 372 IPR008630 GO:0016021|GO:0016757
Ssu6g1242 443 MobiDBLite consensus disorder prediction 1 18 - -
Ssu6g1242 443 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 9 436 IPR008630 GO:0016021|GO:0016757
Ssu6g1242 443 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1242 Ssu-Chr6 20235508 20236839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1242 1 443 Glycosyltransferase AT5G07720 76.586 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1242 K08238 - gmx:100819400 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1242 6 20235508 20236839 Ssu6g1242 6 20235508 20236839 ECH