Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1233 ATGAGTTCTTCTTCCCCACATCGTTCTCGCGGCGATGGCGAGAATAGACCCAGATTTTTCGACTCAAAGACGAAGACCATCTGTTGGGCCAAGGCTGATACTGTCCCCGGCCGTCACCCTGAGAGGTGGCGCAAAGACGCCGCCGGTAACATTGTCTGCAAGCGTTTCTTCAACTGCATCGGCTGCCTCTGCTACGAGTACGATCACATCATTCCCTTTTCCAAAGGTGGTGAGTCCACAGCAGATAATTGCCAAATACTTCAATCAAGAGTTAACAGATTCAAATCGGACAAATATCACGTTGATTCGGATCAATTGAAAGACTACTCTTGTGAGGTTAATTTTACTGATAAGGAGCTTGATATAATTGAGATGGCTGTTTATGGCGATGTGATGCGGCCAGGAAACCAGTGTCGTTGCAGAACTGTTGCTGAAAAGCTTggcaaattcaaatcaaaagatgACACAGATGCATGTAAGTTGCCATAG 489 0.4458 MSSSSPHRSRGDGENRPRFFDSKTKTICWAKADTVPGRHPERWRKDAAGNIVCKRFFNCIGCLCYEYDHIIPFSKGGESTADNCQILQSRVNRFKSDKYHVDSDQLKDYSCEVNFTDKELDIIEMAVYGDVMRPGNQCRCRTVAEKLGKFKSKDDTDACKLP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1233 162 Pfam HNH endonuclease 53 88 IPR002711 GO:0003676|GO:0004519
Ssu6g1233 162 PANTHER F6A14.21 PROTEIN 13 161 - -
Ssu6g1233 162 SMART HNH_5 47 93 IPR003615 -
Ssu6g1233 162 PANTHER HNH ENDONUCLEASE 13 161 - -
Ssu6g1233 162 CDD HNHc 54 93 IPR003615 -
Ssu6g1233 162 Gene3D - 30 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1233 Ssu-Chr6 20133054 20134662 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1233 - - gmx:100775923 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1233 6 20133054 20134662 Ssu6g1233 6 20133054 20134662 ECH