Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1231 ATGGATAAAGCTCTCACTAAACTAGGAGGCTCTTGGATCTCCAAGAAAGCAAAGGCAGAGATTTCCCACATAACCGACGACCTATCATCTCTCTCAAATACTGTCGAAGAAAAGGCAAAACTTTTCATCAACAAGCTGAAAGgaaAATCCCAGAAAGCCTTACCAGATCTCCTTAGAGAGAACAACCTTCCTCCCGGTCTGTTCCCCCGCAACATAACATGCTACGAGTTTGATGAATCAAAAGGAAAGTTGATCGTGTACTTGTCCTCTCCCTGTGAGGTGTGCTTCAAGGACTCATCCATTGTGAGGTATGCAAATCGTGTCAAAGGGACATTATCAAAGGGGAAGCTCACTGTTATAGATGGAATGAAGACCAAGGTTCTGGTGTGGGTCAAGGTGAATAGTGTCGCTGTTGAGAGTTACAAGTCTGACAAAGTATGGTTCACTACCGCCGGTGTTAAGAAATCAAGGCCCAAAGATGCCTATGAAATGCCTCGTGAAGCTATTAAGGTGGAAGAATTTTGA 525 0.4381 MDKALTKLGGSWISKKAKAEISHITDDLSSLSNTVEEKAKLFINKLKGKSQKALPDLLRENNLPPGLFPRNITCYEFDESKGKLIVYLSSPCEVCFKDSSIVRYANRVKGTLSKGKLTVIDGMKTKVLVWVKVNSVAVESYKSDKVWFTTAGVKKSRPKDAYEMPREAIKVEEF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1231 174 Gene3D - 32 174 IPR036758 -
Ssu6g1231 174 SUPERFAMILY At5g01610-like 3 173 IPR036758 -
Ssu6g1231 174 Pfam Protein of unknown function, DUF538 56 163 IPR007493 -
Ssu6g1231 174 PANTHER T31J12.3 PROTEIN-RELATED 3 174 IPR007493 -
Ssu6g1231 174 PANTHER DUF538 FAMILY PROTEIN 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1231 Ssu-Chr6 20108222 20110667 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1231 - - gmx:100776470 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1231 6 20108222 20110667 Ssu6g1231 6 20108222 20110667 ECH