Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1230 ATGACAAGTCTCGTATTTTTGTCTTCCTTCATCCTACTCTCTCTCTGCCTTTTGCTTCCCATTCTCCTTCCAACCTTACCTAGCTCCTACACCCGAGTCAGGACACTGGTGGTACgtacttttaatttttgcaaaatcatGGGTGGTGAGATAGATACTAAATCAATTGAACCGGTCCGGAATGCCGTCTCTTTGTTTGGAGATAAAGGTGATCAGAAGAAATATCAATCTACGAGGAGTAAGAGTGATTGTGAAAAAGAATTAGATGACTTGACAAAGGAACTGGCCAACTGCAAGTTACAATTAGAAGCAAAGCATGCTGCACATATGCAAGCACTTCTTAAGCTGGAGCACAACCAAAAGATGATTCACGAATTGTCTACCCTGCTGAAGAAATCTGACATTGAAAGAAACAAGAACATGAATGAATGTTCAGAGTGCAGAGCTCGCAAAGATGAacttgaatccaagatgaaagaGATGGCTGATCATAACTTGGAGATTGCAAAGGTTCGGGACCAGCTTTTGCATGTTTTAAGTGAATTGAAGGCCACACAAAGGGAGCTTCTTACCAAAGAAACAGAACTTGTTGCTGCTAGAGATTCAGAACTAAAAGCTTTGACAAATGCAAAACAATCGCAATCAGCCTTGGAGGTTGAAAAGGAAGAACTCCTGCAGCAAGTGAAGGAGCTTCATGAAGTTATTCACAGGTCAAAATTAGCTGCCATTGTAACTGAGAAAGAGAAGTTAGCTATATTGTCTGAGAAAGATGAGAAAATTGAGTTAGCAACAAAGGCTACTGCTCAAGTACAACAACAGCTAGAAGATATGAGAAAGCATGTGGAAATGCTGCAGGAATTACAAAATCAACCAATGGATAAGTCCACACTGCATGATTCCCTTCCCTTGGAACCTAAGCAAGCTAATGAAACACTCATTTTATCTGGGGATTCTGCTCCAAAGGCAATAAACGACTCAAACCAATTAAACATCGACATGGAACTAAAGGAAAGAAAGATCATGGATCAATCTGTCTACATTGAGACACTAGAAATGAAATTGAGTCAGTTTAAACAAGAGCTTACTGTTGCAAAGGAAGAAATAAATGGCTTGAATGTTACTAATGAATCACTCAGAAGTGAGTTACATAAGGATAAAGCAGAACTAAACATGAATAAGGAGAGTGACGTTGAAGCACAGGTGGAAATTGCGTTGCTGAGATCTCAGCTTCAGGAACAAAGGTTGGCTTACGAGAATGGACATGTTACTGAAGTTTGTAAAACTGATCACTCAAAGGCAGAAGGTGAAGAGAGAAATAGTGAGAATAAATGTGACCATATCACAATCTCTTTGAAGGATTGCAAATACTTGGTGGAGAAGACAAATGGCGTCCAAGAATCAGTAGGGGAAGTTGGAAGATTGTCAGAGTTAGCATTGATGAAAAAGGAGCTGGAAAATGCATCAGTGAAAATTGCTGAACTGAGGGCACGTGCAGAACAGGCTCTAAGCAGGGCTGAGTTAGCTGAGAATGCTAAAGCAGCGTTAGAGGACAAAATAAGGAGACACAGGGAACATAGGCAGAGAAGGAGGGCTGCTCTTACGGCACTTAGGGAGGAATCTACCCCTAAACCATTTAGTCCTTCCTCTTCATATGGGACACCAGGAACCTACCAGCCCTTAGGTAAGGTTCTCAATATGAAATTGTGA 1707 0.4013 MTSLVFLSSFILLSLCLLLPILLPTLPSSYTRVRTLVVRTFNFCKIMGGEIDTKSIEPVRNAVSLFGDKGDQKKYQSTRSKSDCEKELDDLTKELANCKLQLEAKHAAHMQALLKLEHNQKMIHELSTLLKKSDIERNKNMNECSECRARKDELESKMKEMADHNLEIAKVRDQLLHVLSELKATQRELLTKETELVAARDSELKALTNAKQSQSALEVEKEELLQQVKELHEVIHRSKLAAIVTEKEKLAILSEKDEKIELATKATAQVQQQLEDMRKHVEMLQELQNQPMDKSTLHDSLPLEPKQANETLILSGDSAPKAINDSNQLNIDMELKERKIMDQSVYIETLEMKLSQFKQELTVAKEEINGLNVTNESLRSELHKDKAELNMNKESDVEAQVEIALLRSQLQEQRLAYENGHVTEVCKTDHSKAEGEERNSENKCDHITISLKDCKYLVEKTNGVQESVGEVGRLSELALMKKELENASVKIAELRARAEQALSRAELAENAKAALEDKIRRHREHRQRRRAALTALREESTPKPFSPSSSYGTPGTYQPLGKVLNMKL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1230 568 Coils Coil 137 174 - -
Ssu6g1230 568 Coils Coil 267 290 - -
Ssu6g1230 568 PANTHER EXPRESSED PROTEIN 436 567 - -
Ssu6g1230 568 PANTHER EXPRESSED PROTEIN 49 433 - -
Ssu6g1230 568 Coils Coil 347 381 - -
Ssu6g1230 568 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 436 567 - -
Ssu6g1230 568 Coils Coil 207 234 - -
Ssu6g1230 568 Pfam Weak chloroplast movement under blue light 50 415 IPR008545 -
Ssu6g1230 568 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 49 433 - -
Ssu6g1230 568 MobiDBLite consensus disorder prediction 522 557 - -
Ssu6g1230 568 Coils Coil 477 528 - -
Ssu6g1230 568 Coils Coil 81 108 - -
Ssu6g1230 568 MobiDBLite consensus disorder prediction 541 556 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1230 - - gmx:102665346 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1230 6 20100814 20103079 Ssu6g1230 6 20100814 20103079 ECH