Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1228 ATGGAGTACTCTAATGGATTTCCTAGGAAAAGAGATGTTTCTCTTCAGGAACTTAGCAAAAGGCTTGCTGAGTTTGCTGAAGTAAGAGGATGGGATCAATATCACAGTCCCAGAAATCTTCTTTTAGCCCTTGTTGGAGAGGTGGGAGAGTTGTCCGAGATCTTCCAGTGGAAAGGAGAGGTTGCAAAGGGATTGCCCAATTGGAGTTCTGATGATAAGGAGCACTTAGAGGAAGAGCTTTCGGATGTTTTACTGTATCTAGTGCGTCTTGCTGATGTTTGTGGGCTAGATCTTGGACAAGCAGCTCTGACAAAAATAGTAAAGAATGCTAAGAAATACCCAGTTACTACTGACCACACGGCCACTTCCACCTGCAACTAA 381 0.4383 MEYSNGFPRKRDVSLQELSKRLAEFAEVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVAKGLPNWSSDDKEHLEEELSDVLLYLVRLADVCGLDLGQAALTKIVKNAKKYPVTTDHTATSTCN 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1228 126 PIRSF UCP029826_pph 6 126 IPR025984 GO:0009143|GO:0047429
Ssu6g1228 126 PANTHER - 1 119 - -
Ssu6g1228 126 Pfam MazG-like family 47 122 IPR025984 GO:0009143|GO:0047429
Ssu6g1228 126 SUPERFAMILY all-alpha NTP pyrophosphatases 13 117 - -
Ssu6g1228 126 CDD NTP-PPase_RS21-C6_like 20 109 IPR025984 GO:0009143|GO:0047429
Ssu6g1228 126 Gene3D - 8 119 - -
Ssu6g1228 126 PANTHER DCTP PYROPHOSPHATASE 1 1 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1228 Ssu-Chr6 20059314 20059779 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1228 K16904 - gmx:100500294 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1228 6 20059314 20059779 Ssu6g1228 6 20059314 20059779 ECH