Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1220 ATGTTGGGTTCAAAGAAATCTCCTTTGAAGGTTGCTAAACCTAGCTCTGTTGAATCTTGGACGAATCCATTTGATTCTGATGATGAGGCAAAGGATACCAAAAAGTATAGTTCCTCCAGAAAGACTTCTTCGGAACGCGCACTTGTTACACTGGAAGTTAACACCAACCCCCTTAATGATGATATTGATGCCAATAAGAAATCTTCATCGACTATGTTTGCCTTTCAATCGGCTGAGCGGAACAGGTATAAGAATGATTTTCGTGATTCTGGTGGATTAGAGAATCAATCGGTACAAGAACTGGAGAATTATGCTGTTTACAAGTCTGAAGAGACTACAAATTCAGTCAACAATTGTTTGAAGATAGCAGAGAACATGAGAGAGGATGCTACCAAGACACTAGTCACCCTTCATCACCAGGGTGAACAGATTACCAGGAGTCACTATGTTGCTGCTGACATTGATCACCATCTAAGTCGGGGAGAAAAGCTCTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACGAGGGCAATAAAAGGCCCTGTTATTGTTGGAGATGCCGCAGTCAGGAGAAAGGGAAATCACTTGGAGCAGAGAGAGAAGTTGGGGCTGACTTCTGCACCTAAAGGGCAGTCCAAGCTGCGGTCCCCACCTCAAGAACCAACAAATGCACTTGAAAAAGTTGAGGTTGAAAAAAGGAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGTTGGGAGAGCTTAAAGAGATGGCTGTTGACATGGGATCCGAGATTGAGAGTCATAACGGAGCCCTGAATCATCTAGACGATGATGTGGAAGAGTTGAATTTCCGAATGAAAGGTGCTAATCAACGCGGCCGTCGTTTACTCGGAAAATAA 903 0.4363 MLGSKKSPLKVAKPSSVESWTNPFDSDDEAKDTKKYSSSRKTSSERALVTLEVNTNPLNDDIDANKKSSSTMFAFQSAERNRYKNDFRDSGGLENQSVQELENYAVYKSEETTNSVNNCLKIAENMREDATKTLVTLHHQGEQITRSHYVAADIDHHLSRGEKLLGSLGGLFSKTWKPKKTRAIKGPVIVGDAAVRRKGNHLEQREKLGLTSAPKGQSKLRSPPQEPTNALEKVEVEKRKQDDALSDLSDLLGELKEMAVDMGSEIESHNGALNHLDDDVEELNFRMKGANQRGRRLLGK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1220 300 SMART tSNARE_6 230 297 IPR000727 -
Ssu6g1220 300 SMART tSNARE_6 101 168 IPR000727 -
Ssu6g1220 300 Gene3D - 92 169 - -
Ssu6g1220 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 300 - -
Ssu6g1220 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Ssu6g1220 300 SUPERFAMILY SNARE fusion complex 234 298 - -
Ssu6g1220 300 MobiDBLite consensus disorder prediction 1 45 - -
Ssu6g1220 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 103 167 IPR044766 GO:0005484|GO:0031201
Ssu6g1220 300 MobiDBLite consensus disorder prediction 24 41 - -
Ssu6g1220 300 Coils Coil 273 293 - -
Ssu6g1220 300 MobiDBLite consensus disorder prediction 205 229 - -
Ssu6g1220 300 CDD SNARE_Qc 238 296 - -
Ssu6g1220 300 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 300 - -
Ssu6g1220 300 SUPERFAMILY SNARE fusion complex 96 166 - -
Ssu6g1220 300 Gene3D - 232 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1220 Ssu-Chr6 19948145 19949765 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1220 K18211 - gmx:100809874 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1220 6 19948145 19949765 Ssu6g1220 6 19948145 19949765 ECH