Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1211 ATGAATCCTGACAAGTTTACTCACAAGACGAATGTGGCTCTTGCATCGGCGCACGAGCTCGCAATGAGTTCAGGCCACGCGCAGTTCACTCCCCTCCACCTGGCACACGCGCTGATTTCCGATTCCAACGGCATCTTCTTCCAAGCAATTTCCAGCGCGGGTGGCGAGGATTCCGCACGCGCTGTGGAGCGAGTGCTGAACCAGGCTCTGAAGAAACTACCCTGTCAGTCTCCGCCCCCGGACGAGATACCCGCGAGCACGACCCTCGTGAAGGCCATCAGAAGAGCACAGGCCTCACAGAAATCACGCGGCGACACCCATTTAGCCGTTGATCAATTGATCCTCGGAATCCTCGAAGATTCCCAAATCGGGGAGCTATTGAAGGAAGCGGGTGTGGCGGTGGCGAGGGTTAAATCGGAGGTAGAGAAGCTTCGCGGGAAGGAAGGGAAGAAGGTTGAGAGCGCTTCCGGGGACACGAATTTTCAGGCGTTGAAGACTTACGGGCGTGACCTTGTTGAGCAAGCGGGGAAGCTTGACCCGGTCATTGGGCGTGACGAGGAGATAAGAAGGGTTGTGAGGATTTTGTCACGGAGGACTAAGAACAACCCGGTTCTGATCGGAGAACCAGGCGTTGGTAAAACCGCGGTGGTGGAAGGCTTGGCGCAGAGGATAGTTAGAGGGGATGTTCCGAGCAACCTTGCTGATGTTAGGCTTATTGCGTTGGACATGGGGGCGTTGGTCGCGGGTGCGAAGTATAGGGGGGAGTTTGAGGAGCGGTTGAAGGCGGTTTTGAAGGAAGTAGAGGAGGCTGAGGGGAAGGTTATTCTGTTTATTGATGAGATTCATTTGGTGCTTGGTGCTGGTCGGACTGAGGGGTCCATGGATGCTGCTAACCTCCTCAAGCCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGCGCAACCACGCTTGAGGAGTACAGGAAGTATGTGGAGAAGGATGCCGCGTTTGAGAGGAGGTTTCAACAGGTTTTTGTGGCTGAGCCTAGTGTGGGTGACACCATTAGCATCCTTCGTGGGTTGAAAGAGAGATATGAAGGCCATCATGGTGTTAGAATTCAGGACCGTGCTCTTGTTGTGGCAGCTCAACTGTCTAGCCGGTACATTACCGGGCGTCATCTTCCTGACAAGGCAATTGATTTAGTGGATGAGGCCTGTGCAAATGTGAGAGTTCAACTTGATAGTCAGCCCGAGGAAATTGATAACCTTGAAAGAAAGAGAATGCAGCTGGAAGTGGAACTTCACGCTCTGGAGAAAGAGAAGGACAAAGCTAGCAAAGCCCGTCTTGTAGAAGTGCGGAAAGAACTTGATGACTTAAGAGACAAGCTCCAACCTTTGATGATGAAGTAccgaaaagagaaagagaggatTGATGAGATTCGAAGGCTCAAGCAGAAACGAGAAGAGCTTCTCTTTGCTTTACAAGAGGCTGAGAGACGATATGATCTGGCTAGAGCTGCAGACCTGCGATATGGAGCAATTCAAGAGGTGGAAACTGCAATTCAACAGCTTGAAGGGAACACTGAGGAAAATTTGATGTTAACAGAAACTGTTGGGCCAGAGCAAATAGCTGAGGTTGTGAGCCGCTGGACTGGCATACCAGTGACTAGGCTTggccaaaatgaaaaagaaaggttGATTGGACTTGGTGACAGATTGCACAAGAGAGTTGTAGGACAAGACCAAGCTGTTAATGCTGTTGCTGAGGCTGTTTTGAGATCAAGAGCTGGGCTAGGGAGACCTCAACAACCAACTGGTTCATTCCTATTTCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCTGAGCAACTGTTTGATGATGAAAACCAGTTGGTGAGAATTGACATGTCCGAATACATGGAGCAGCACTCAGTTTCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGACAACTAACTGAAGCTGTAAGGCGAAGACCTTACAGTGTGGTGCTTTTTGATGAAGTGGAAAAGGCACATACATCTGTGTTCAACACTCTTCTTCAAGTTTTGGATGATGGGAGATTAACTGATGGACAAGGCCGTACTGTGGACTTTAGAAACACTGTCATTATCATGACCTCAAATCTCGGAGCAGAGCACCTCCTAAATGGACTCTCGGGAAAATGTTCCATGCAAGTTGCTCGGGATAGGGTAATGCAGGAGGTGAGAAGGCATTTTAGGCCAGAATTGTTGAATCGACTTGATGAAATTGTGGTATTTGACCCTCTTTCACACGAGCAATTGAGGAAGGTTGCAAGGTTACAAATGAAGGACGTTGCTAGTCGTCTTGCTGAGAGAGGAATTGCCTTAGCAGTGACAGATGCAGCACTAGACTATATACTTGGCGAGAGCTATGATCCTGTGTATGGTGCTAGACCAATTAGGAGGTGGCTTGAGAAGAAGGTGGTGACAGAACTATCTAGAATGCTTGTAAGGGAAGAGATTGATGAGAATTCAACCGTTTACATAGATGCTGGACCCAAAGGGAGCGAGTTGGTCTACCGTGTAGAAAAGAATGGAGGGATCGTTAATCCTACAACTGGGCAGAAGTCAGATATCTTGATTCAGATACCTAATGGACCTCCAGCTGATGCTACTCAAACagtgaagaagatgaagattgaGGAAATTGATGATGACGACATGGAAGAGTGA 2727 0.4807 MNPDKFTHKTNVALASAHELAMSSGHAQFTPLHLAHALISDSNGIFFQAISSAGGEDSARAVERVLNQALKKLPCQSPPPDEIPASTTLVKAIRRAQASQKSRGDTHLAVDQLILGILEDSQIGELLKEAGVAVARVKSEVEKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLLKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVGDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERIDEIRRLKQKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGNTEENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNEKERLIGLGDRLHKRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLNGLSGKCSMQVARDRVMQEVRRHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVASRLAERGIALAVTDAALDYILGESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAGPKGSELVYRVEKNGGIVNPTTGQKSDILIQIPNGPPADATQTVKKMKIEEIDDDDMEE 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1211 908 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Ssu6g1211 908 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Ssu6g1211 908 Gene3D - 550 766 IPR027417 -
Ssu6g1211 908 Pfam ATPase family associated with various cellular activities (AAA) 204 320 IPR003959 GO:0005524|GO:0016887
Ssu6g1211 908 PANTHER ATP-DEPENDENT CLP PROTEASE 4 862 - -
Ssu6g1211 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Ssu6g1211 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Ssu6g1211 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Ssu6g1211 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Ssu6g1211 908 Pfam AAA lid domain 344 443 IPR041546 -
Ssu6g1211 908 CDD AAA 182 342 - -
Ssu6g1211 908 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Ssu6g1211 908 Coils Coil 406 455 - -
Ssu6g1211 908 Gene3D - 3 148 IPR036628 -
Ssu6g1211 908 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Ssu6g1211 908 CDD AAA 571 766 - -
Ssu6g1211 908 Pfam Clp amino terminal domain, pathogenicity island component 17 65 IPR004176 -
Ssu6g1211 908 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Ssu6g1211 908 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Ssu6g1211 908 SMART AAA_5 199 344 IPR003593 -
Ssu6g1211 908 SMART AAA_5 597 768 IPR003593 -
Ssu6g1211 908 SMART ClpB_D2_small_2 767 858 IPR019489 -
Ssu6g1211 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 545 IPR027417 -
Ssu6g1211 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 849 IPR027417 -
Ssu6g1211 908 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Ssu6g1211 908 Gene3D - 150 343 IPR027417 -
Ssu6g1211 908 Coils Coil 253 273 - -
Ssu6g1211 908 Gene3D - 767 865 - -
Ssu6g1211 908 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 862 - -
Ssu6g1211 908 Coils Coil 463 500 - -
Ssu6g1211 908 Gene3D - 344 544 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1211 Ssu-Chr6 19812743 19815985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1211 K03695 - gmx:732632 1631.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1211 6 19812743 19815985 Ssu6g1211 6 19812743 19815985 ECH