Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1197 ATGGCACAAGCACAAACCCAGAGACCCTGTTCAAGCATCCTCGATTCTTTGGGGGAAGAAATCGTGGGAATCATCGCACCCGTTTCAATATGCATGTTCTTGGTCGTAATCTTGGTCTCAATTCTCAACGCCAACTCTCCCTTCGATGCGTCGATGGCCAGCATAGCCACCATGGCGTACAACGAAACAACCTCCGACTCTACCTGGGACAAATTCCTAGGTGCCCTTTTGAACTCCTTGGTCTTCGTCGTCGTCGTCACCGTCGCAACCTTCGTCTTGGTCCTCCTCTTCTACTTCAGATGCACCAGGTTCTTGAAACTCTACATGGCTTTCTCCGCTTTCGCTGTGTTGGGATTCCTCGGCGGGGAAGTGTCACTGTTCTTGATTCAGCATTTTAGTACTCCCATTGATTGCATAACGTTTTTCCTTGTTTTGTGTAATTTCGCCGTTGTCGGTGTTTTGGCCGTGTTTATGTCTAAAATGGCGATTTTTGTGACGCAAGGGTACTTGGTTGTTATTGGAATGTTGGTTGCTTATTGGTTTACTATGTTGCCTGAGTGGACCACGTGGGCCATGCTTGTTGCTATGGCGTTGTATGACCTTGCTGCAGTTTTGTTACCCGTTGGGCCATTAAGGCTTTTGGTAGAGCTTGCAATATCGAGGGATGAGGAAATCCCCGCATTGGTTTATGAGGCTAGGCCAGTGAACCGTGGTAATTTGGATCCTAGGGATGTTGTGCAGAGGCGGTTGTGGAGAGATAGGAGGGTTGAGAATTTGAATCTCCAAACTGATTCCAATCTGAATGGTAACTCAGTGTTGGGCCATGGCCCCAGTGCCGAATCACACCCTGATTCGGATGCAAGTGCAGCCAATAACCAGGATGACGCGAACTTGATTAGGGAAAATGCTtctccaaattcaaatttgaatgcTAATACTTCTAGTGGCTCCTATAGTTACAGAAATTTGGTGAGTGTGGAAGAGGGACGGGCTCAGGTTCAAGAAACTGATTCGGACCTTTCTGCGCCCTTGATTGATCGTGGAATGAATGTCCAGCTCAGTAGAGTGGAAGATGCTTTGTCAAGTGAAAATTTGATGCTAGAAGGAATTGGATTGGGTTCCTCTGGTGCAATCAAGTTAGGGCTGGGAGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCCATGTATGATTTTATGACGGTGTATGTGTGTTATCTTGCTATCATTGCGGGTCTCGGCATAACTTTGATGCTTTTGGCTTTATATCAGAGAGCTTTGCCTGCTCTTCCCGTGTCAATAGCACTGGGCgtgttgttttatttcttgACAAGGCTCTTACTTGAAGTATTTGTTGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA 1392 0.4526 MAQAQTQRPCSSILDSLGEEIVGIIAPVSICMFLVVILVSILNANSPFDASMASIATMAYNETTSDSTWDKFLGALLNSLVFVVVVTVATFVLVLLFYFRCTRFLKLYMAFSAFAVLGFLGGEVSLFLIQHFSTPIDCITFFLVLCNFAVVGVLAVFMSKMAIFVTQGYLVVIGMLVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNRGNLDPRDVVQRRLWRDRRVENLNLQTDSNLNGNSVLGHGPSAESHPDSDASAANNQDDANLIRENASPNSNLNANTSSGSYSYRNLVSVEEGRAQVQETDSDLSAPLIDRGMNVQLSRVEDALSSENLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYVCYLAIIAGLGITLMLLALYQRALPALPVSIALGVLFYFLTRLLLEVFVVQCSLNLLLF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1197 463 PANTHER PRESENILIN 11 463 - -
Ssu6g1197 463 Gene3D Presenilin 370 455 IPR042524 -
Ssu6g1197 463 PANTHER PRESENILIN 11 463 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu6g1197 463 PRINTS Presenilin family signature 183 190 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu6g1197 463 PRINTS Presenilin family signature 25 35 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu6g1197 463 PRINTS Presenilin family signature 200 217 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu6g1197 463 Pfam Presenilin 18 453 IPR001108 GO:0004190|GO:0016021|GO:0016485
Ssu6g1197 463 SMART psh_8 73 449 IPR006639 GO:0004190|GO:0016021
Ssu6g1197 463 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1197 Ssu-Chr6 19534986 19536377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1197 5 463 Miscellaneous Gene Families AT2G29900 59.348 6.18e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1197 K04505 - gmx:100780823 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1197 6 19534986 19536377 Ssu6g1197 6 19534986 19536377 ECH