Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1190 ATGGCAATGCCGGAAACAAGTCCTGCCGCCACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAGTATTATCACATTCTGCACCAATCCCCAAACTTAGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGATCAGACAGTAATGGTGTGATGACGACTGTGACAACTACAACAGCAATCAATGACAAGATTACTTCCCTGAATTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCTTATGAGAAAGGCGTGATAGTTTTAGTAACTGGATGCTTAACTGGAAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGATAAAGGATATTATGTCTTAAATGACGTCTTTAGGTACATTGAGGAGAATGACACATCACAGTTAAATTCTGCCTCAGTAAATGTCATCAATGACAATGCTGAGGCAGTGCACGTGCCAGAATCAGAGGATATGCATGCTCCCGAACATCTTGTGGAAGACACTGCAACTTTGGCAGAGAGTGAAAACCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCTGAACCCCCTACTGATTTAAGTCAGAATGATATTGTTACGGTTCATGATTCAACTTCTGCTGTCCAGGATGGTGCACCAAGGAGATCATATGCAGCCATTGTAATGAAAAGTAACACAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCGAGAATGGCATCTGCTAAATCCAGTGAACAATGGCCTACGACTGCCAAATCAACTCCCGGACCTGAGGCATTAGCTCCTAGCAGTGATAGTGCCCCTGGGAGTAGTGATGTTCATGAAGAAGCTGGAGGTCACTCCATATACATACGGAACCTACCATATAATGCAACAGTTGAACAACTTGAAGAGATCTTTAAGAAATTTGGTCCTATTAAGCGTGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTGGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGCGGGAGAGGGAGGTATCCTTCAGGAAGAGGTGGTTTCCGAAGTGACAGTTTCAGGGCGCGTGGGAAATTTGGTGGTGGACGGAGTTATGGCAGAAATGACTTCAGAAACCAAGGAGAATTCTCTGGACAACCTAGGAGTTCTCAACGGTCAAATCAAAATGGAGGTGGGCGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCAGCTTCAGCAACATGA 1386 0.4437 MAMPETSPAATTPSAQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDSNGVMTTVTTTTAINDKITSLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTSQLNSASVNVINDNAEAVHVPESEDMHAPEHLVEDTATLAESENLNNGAEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVHDSTSAVQDGAPRRSYAAIVMKSNTASGHVYVPSRAARMASAKSSEQWPTTAKSTPGPEALAPSSDSAPGSSDVHEEAGGHSIYIRNLPYNATVEQLEEIFKKFGPIKRGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSDSFRARGKFGGGRSYGRNDFRNQGEFSGQPRSSQRSNQNGGGRGGRQGVGNRNSTPSASAT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1190 461 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 6 450 - -
Ssu6g1190 461 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 6 450 IPR039539 -
Ssu6g1190 461 Gene3D - 286 385 IPR012677 -
Ssu6g1190 461 SUPERFAMILY NTF2-like 14 135 IPR032710 -
Ssu6g1190 461 SUPERFAMILY RNA-binding domain, RBD 300 407 IPR035979 GO:0003676
Ssu6g1190 461 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Ssu6g1190 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 362 IPR000504 GO:0003723
Ssu6g1190 461 MobiDBLite consensus disorder prediction 264 299 - -
Ssu6g1190 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Ssu6g1190 461 Gene3D - 8 138 - -
Ssu6g1190 461 SMART rrm1_1 304 375 IPR000504 GO:0003723
Ssu6g1190 461 MobiDBLite consensus disorder prediction 264 293 - -
Ssu6g1190 461 CDD RRM_SF 305 362 - -
Ssu6g1190 461 MobiDBLite consensus disorder prediction 376 461 - -
Ssu6g1190 461 CDD NTF2 14 136 IPR018222 -
Ssu6g1190 461 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Ssu6g1190 461 MobiDBLite consensus disorder prediction 420 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1190 Ssu-Chr6 19434487 19441399 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1190 K24983 - gmx:100801253 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1190 6 19434487 19441399 Ssu6g1190 6 19434487 19441399 ECH