Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1179 ATGAGGTGGGAAAAGGTGGAGGTGAAGGCTACAGGCACAGAGGGTGGAGGTGGAAATGAGGTGTATGGGCCAGGCAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGAGGATACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTGAAGCAGACGTGGAGCGAACCCGCTATAAAAGGCTCCCCACCTACTCCTAGGGACAGCCATACTTGCACAGCCATTGGTGATAACCTGTTTGTGTTTGGGGGTACAGATGGGATGAACCCTCTGAAGGATTTGCACATATTAGACACCTCTTCACACACATGGATTTGTCCAACCATAAGAGGAGAAGGGCCACCGGCACGCGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAATAATAATGAGGTCTATTACAATGATCTTTACATATTAAATGCAGAGACGTTTGTTTGGAAGTGCGCTACAACATCAGGCACTCCGCCATCTCCTCGTGATAGCCACACTTGTTCATCttggaaaaacaaaattattatgatagGGGGTGAAGATGGGCATGATTATTATTTGTCTGACGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCACCTCGAGCTGGTCACTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTCTATAATGACCTTTATATGCTCGATATTGATACTGGTGTTTGGACAAATGTTACAACTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGTGGTGTTCTTGTATTCATCGGTGGTTGTAATAAAAGTCTTGAGGCCTTGGATGATATGTATTACCTATATACAGGGATTGCTAGGGAAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAACAATTGAAACTGAAATGCCAAGAACAAAATCTCAATCCTAGCCAAAATCAAGTTCTAGTTAGATATGGAGTGGGTTCTGATATGGGCCAGATCATGACAGTGTTGAATTATAGCCAGCCAAGTAGACTAAATATCCCAGTAAACCAATCCCTACCTCCTGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATCTCAGAAGGATATACTATTGAGACTGTTATTGATGGAAAGCCTCTTCGCGGAATTCTGTTTTTAAACAAGCCAAACACTTTGTACTCAGCTGTTCATACTTCCAGTAGGAAAAGGACCGTTGGTGAAGTAGATAGTGTTGTCTCAAATGGCATACACCCTAACCAATTAAAGACTCCTAAAGTGCTCAAGCAAAATCAAATGGAAAATCGAGAAGCATTTTGTGGAGACAGCTCAGAATCTCATGAACACCACACTGAATCTGTTGCTGTGCTTATGTCAAGTAACCCAATGACTGCCAATTCTTCTGATACCCACAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCTGCTTTGAATCGAAATGATGAAAAACACGAAACACCCAAATCCTTGACGGGAAACATGAAAAATGATGTTGCAAATGATGTGACAAGTTCCAAAGGTGTGGTGCAAACAATTGATCAAACAAATGTGCTAATTTCCAACTTTGAAGTTGCAAGACATGATAAAAAAAGTGATGCAACAAACTACAACACTGAATTTCTGAAACCTGCTGCAACTGAGAGTGCTATGTGTCTGTCAAATCAAGGTGCTGTGGCGGATTCCACAACTCCAACAAGAGAATGCAGTGAACcagcaaaattaatttga 1875 0.4208 MRWEKVEVKATGTEGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSEPAIKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSSHTWICPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADNNNEVYYNDLYILNAETFVWKCATTSGTPPSPRDSHTCSSWKNKIIMIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNLNPSQNQVLVRYGVGSDMGQIMTVLNYSQPSRLNIPVNQSLPPGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNTLYSAVHTSSRKRTVGEVDSVVSNGIHPNQLKTPKVLKQNQMENREAFCGDSSESHEHHTESVAVLMSSNPMTANSSDTHKVSANPEPEAAALNRNDEKHETPKSLTGNMKNDVANDVTSSKGVVQTIDQTNVLISNFEVARHDKKSDATNYNTEFLKPAATESAMCLSNQGAVADSTTPTRECSEPAKLI 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1179 624 SUPERFAMILY Galactose oxidase, central domain 23 228 IPR011043 -
Ssu6g1179 624 MobiDBLite consensus disorder prediction 525 539 - -
Ssu6g1179 624 PANTHER KELCH REPEAT DOMAIN 1 448 - -
Ssu6g1179 624 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 448 - -
Ssu6g1179 624 Pfam Galactose oxidase, central domain 39 88 - -
Ssu6g1179 624 SMART kelc_smart 40 90 IPR006652 GO:0005515
Ssu6g1179 624 SMART kelc_smart 248 294 IPR006652 GO:0005515
Ssu6g1179 624 SMART kelc_smart 197 247 IPR006652 GO:0005515
Ssu6g1179 624 SMART kelc_smart 91 140 IPR006652 GO:0005515
Ssu6g1179 624 MobiDBLite consensus disorder prediction 505 548 - -
Ssu6g1179 624 Gene3D - 1 70 IPR015915 GO:0005515
Ssu6g1179 624 Gene3D - 156 393 IPR015915 GO:0005515
Ssu6g1179 624 Gene3D - 71 155 IPR015915 GO:0005515
Ssu6g1179 624 Pfam Kelch motif 127 171 - -
Ssu6g1179 624 Pfam Galactose oxidase, central domain 185 230 - -
Ssu6g1179 624 Pfam Galactose oxidase, central domain 236 285 - -
Ssu6g1179 624 SUPERFAMILY Galactose oxidase, central domain 181 317 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1179 Ssu-Chr6 19315428 19322941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1179 54 313 Acyl Lipid Metabolism Gene Families AT3G05420 29.603 7.51e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1179 - - gmx:100820222 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1179 6 19315428 19322941 Ssu6g1179 6 19315428 19322941 ECH