Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1178 ATGCAGGGTTTAATTCGCAAACTGGTGGCACACCACCCCTATCGCCACACCAACTCTCACCGTACCTTCCACACTAGCGTTCGCAGCGCCTTCTCCTCTCTTCCCAAACCTTCACAGCCCCAACTGCAGCAGGGGAACCCCATTCCCCCTTCCTTCCTCACTCGCCCACTTCATCATTTTCACTCATGCCGCTCCCTTTCCACCAAACTTCGTTCCTTCCTCTCCCAACCAATGATCCTGCACCACTCCGCCTTCAATTCTCTCCTCAGGGTCTCCGCCAGAAGCCTCCAATATTGCAGGCCCGGTCTTCGTTATTTTCGTCGACACAACTTCGATTTCAACCATAATCATGATTTTTCCCGGCGTTCTTGGAGATCATGGTTTCACAGGCTAACACCTAATGACATGGTTTTGGGCTTGATTATAGCTAAtgttgctatttttttattgtggaGGATAGCAGATGAaaagtttatgataaaaaaCTTTACTATCTCTTTGGACAATTTTAAGAGTGGACGTTTGCACACTTTGATTACCAATGCATTCAGTCATGTAGATACCTGGCATATAGTTTCCAACATGATTGGACTCTACTTCTTTGGAATGAATATTGGAAGAAATTTTGGGCCTGAATTTCTGCTGAAGCTGTATCTTGCTGGGGCAGTTGGTGGCTCTGTTTTTTACTTAGTGCATCAGGCCTATAAAGCACAAACATCAAAGGACTGGAGAGCTATGATTGCATCAAAGGAATTAGCATTGGGGGCAAGTGGAGCTGTGAATGCAGTTATGCTACTAGACATATTCCTCTTTCCAAAAGCAACCCTTTACATTGACTTTTTTATACCAGTTCCTGCTGTCTTGCTGGGTATCTTTTTGATTGGGAAAGATATGCTGAGGATAATAGAGGGAAACAGTCAAATATCAGGATCTGCACATTTGGGGGGTGCTGCTGTTGCAGCCATAGCTTGGGCAGGTGTTCGTAAAGgaagattctaa 999 0.4364 MQGLIRKLVAHHPYRHTNSHRTFHTSVRSAFSSLPKPSQPQLQQGNPIPPSFLTRPLHHFHSCRSLSTKLRSFLSQPMILHHSAFNSLLRVSARSLQYCRPGLRYFRRHNFDFNHNHDFSRRSWRSWFHRLTPNDMVLGLIIANVAIFLLWRIADEKFMIKNFTISLDNFKSGRLHTLITNAFSHVDTWHIVSNMIGLYFFGMNIGRNFGPEFLLKLYLAGAVGGSVFYLVHQAYKAQTSKDWRAMIASKELALGASGAVNAVMLLDIFLFPKATLYIDFFIPVPAVLLGIFLIGKDMLRIIEGNSQISGSAHLGGAAVAAIAWAGVRKGRF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1178 332 Gene3D - 134 325 IPR035952 -
Ssu6g1178 332 Pfam Rhomboid family 171 326 IPR022764 GO:0004252|GO:0016021
Ssu6g1178 332 PANTHER RHOMBOID-LIKE PROTEIN 12, MITOCHONDRIAL 18 325 - -
Ssu6g1178 332 MobiDBLite consensus disorder prediction 28 48 - -
Ssu6g1178 332 PANTHER RHOMBOID PROTEASE 18 325 - -
Ssu6g1178 332 SUPERFAMILY Rhomboid-like 135 329 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1178 Ssu-Chr6 19265104 19275800 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1178 - - gmx:100819148 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1178 6 19265104 19275800 Ssu6g1178 6 19265104 19275800 ECH