Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1168 ATGCGACGACGGGCTGCCGAGTATCGGCGCCCGGTTCGACGGAGGTTTTCATATTGGATCTGGCTTCTCCTCGCCTTCTCCTCTGTCCTCGCTTTGCTTCTCTTCCTTCTGCAGCACAATCACCACCACCAAGATCCGCTTCAACATCCTTTGCTGGAGAGAAATGCAAGAGTTGAACATTCTGCTAAGGAGAGTTTGAATTTTACTGAAGAGATTTTAAGCGTAACATCATTTTCGCGGCAGTTAGCAGAACAAATGATTCTGGCCAAGGCTTATCTGGTTATTGCCAAAGAACACAACAATCTTCACCTTGCTTGGCAACTTAGCTCAAAGATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGTGAGCCTGTCACATTGGAGGAAGCAGAGCCAATTATTAAAAGCCTTTCTTTTCTAATGTTTAAGGCACAAGATATCCATTATGACATTGCAACCACAATAGTGACTCTGAAATCGCATATTCAAGCTCTAGAAGAGCGTGCCAATGCAGCAATAGTTCAAAGCACTGTGTTTGGTCAAATAGCAGCCGAAGCAGTACCTAAGAGTCTTCATTGCCTAAATGTGAAACTCATGTCTGATTGGTTGAAGATGCCATCCCTGCAAGAACTCTCAGATGAGAGGAAAAACTCCCCACGGCTCGTGGACAACAATCTATATCATTTCTGCATTTTTTCAGATAATGTACTAGCAACATCTGTAGTTGTAAACTCTACTGTCTCCAATGCTGACCATCCAAAGCAGTTGGTCTTTCACATTGTCACTAATGGAGTCAATTATGGGGCAATGCAAGCATGGTTCCTAAGTAATGACTTTAAAGGAGCCACCATAGAGGTACAGAACATTGAGGAGTTTCATTGGTTAAATGCATCTTATTCTCCACTTGTCAAGCAGCTCCTCAATCCTAACTCGCGAAGCTTCTATTTTGGAGCATATCAAGATTTAAATGTTGAACACAAAATGCGGAATCCCAAGTATTTGTCTTTATTGAATCATCTTCGGTTTTACATCCCTGAGATTTATCCGCAACTTGAGAAGGTTGTCTTCCTGGATGATGACCTTGTTGTCCAGAAGGATCTGACCCCTCTTTTCTCTCTGGATTTGCATGGGAATGTGAATGGTGCAGTTGAAACTTGTCTTGAAGCATTTCATCGTTACTACAAGTATCTCAACTTCTCAAACTCAATTATTAGCTCAAGGTTTGATCCGCAGGCATGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGAGGAAGGCAAATGTGACCGCAAGGTATCACTATTGGCAAGAGCAGAATGCTGACGGGACACTCTGGAAAGTGGGGACACTTCCTCCTGCTCTTCTATGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTAAATATTGACAACCGCCTCATTGAAAGTGCGGCAGTTATTCACTTCAATGGGAACATGAAGCCGTGGTTGAAGTTAGCTATAGGCAGGTATAAGCCACTATGGGACAAGTACATAAATCAAAGTCACCCTCATCTTCAAGATTGTGTCACAAGTTGA 1611 0.4277 MRRRAAEYRRPVRRRFSYWIWLLLAFSSVLALLLFLLQHNHHHQDPLQHPLLERNARVEHSAKESLNFTEEILSVTSFSRQLAEQMILAKAYLVIAKEHNNLHLAWQLSSKIRSCQLLLSKAAMTGEPVTLEEAEPIIKSLSFLMFKAQDIHYDIATTIVTLKSHIQALEERANAAIVQSTVFGQIAAEAVPKSLHCLNVKLMSDWLKMPSLQELSDERKNSPRLVDNNLYHFCIFSDNVLATSVVVNSTVSNADHPKQLVFHIVTNGVNYGAMQAWFLSNDFKGATIEVQNIEEFHWLNASYSPLVKQLLNPNSRSFYFGAYQDLNVEHKMRNPKYLSLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSRFDPQACAWAFGMNIFDLVAWRKANVTARYHYWQEQNADGTLWKVGTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWDKYINQSHPHLQDCVTS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1168 536 CDD GT8_like_1 231 524 - -
Ssu6g1168 536 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 533 IPR029044 -
Ssu6g1168 536 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 534 IPR029044 -
Ssu6g1168 536 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 536 IPR029993 GO:0047262
Ssu6g1168 536 Pfam Glycosyl transferase family 8 235 510 IPR002495 GO:0016757
Ssu6g1168 536 PANTHER HEXOSYLTRANSFERASE 3 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1168 Ssu-Chr6 19029417 19032730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1168 1 533 Glycosyltransferase AT2G20810 55.204 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1168 K13648 - gmx:100805886 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1168 6 19029417 19032730 Ssu6g1168 6 19029417 19032730 ECH