Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1166 ATGGGTTGGGCCATAGCTCTTCACGGCGGCGCCGGCGACATCCCGCTCTCCCTTCCACCGGAGCGCCGGCAGCCGCGCGAGGAAGCCCTCCGGCACTGCCTCCGAATCGGCGTGGAAGCTCTCAAAGCGAAACTGCCTCCTCTGGACGTGGTTGAGCTTGTCGTTCGCGAGTTGGAGAACATTCCGCAGTTTAACGCGGGGAGGGGATCTGTGCTCACCTCCGAAGGCACCGTCGAAATGGAAGCTTCCATCATGGACGGCACCACTATGAACTGCGGTGCTGTTTCCGGCCTCACTACGGTCGTCAACGCCATCTCTCTGGCTCGATTGGTGATGGAGAAGACGCCTCACATCTATCTCGCTTTTGATGGAGCAGAGGAATTTGCAAGACAACAAGGCGTTGACACTGTAGATTCAAGCCATTTTATTACTGCAGAAAATATTGAAAGGCTAAAGCAGGCAAAAGAAGCCAATAGGGTCCAGATTGATTATACCCAACCTGTCCAAAATGATACTAAGAAAGAAACGCCAATTGCTAATGGTGATAGTCAAATTGGAACTGTTGGGTGTGTGGCTGTTGATGGTCATGGGAATTTAGCTTCTGCAACATCTACTGGTGGATTAGTGAACAAAATGGTGGGTCGAATTGGTGACACACCAGTCATAGGTGCTGGGACCTATGCCGATGCACGCTGTGCGGTTTCAGCAACAGGCAAAGGTGAAGCAATAATACGTGGGACAGTGGCAAGAGATGTGGCTGCTCTGATGGAGTTCAAGGGTCTTTCTCTCGAGGAAGCTGCTAGTTGTGTTGTACATGAGCGCACACCAAAAGGCACTGTTGGTTTGGCTGCTGTGTCTGCCAAAGGAGAAGTTGCAATGCCTTTTAATACAACAGGCATGTTCAGAGCGTGTGCTACTGAAGATGGATATTCTGAGATTGCAATTTGGCCTGCTGCCAAAATTGAGTGA 969 0.5098 MGWAIALHGGAGDIPLSLPPERRQPREEALRHCLRIGVEALKAKLPPLDVVELVVRELENIPQFNAGRGSVLTSEGTVEMEASIMDGTTMNCGAVSGLTTVVNAISLARLVMEKTPHIYLAFDGAEEFARQQGVDTVDSSHFITAENIERLKQAKEANRVQIDYTQPVQNDTKKETPIANGDSQIGTVGCVAVDGHGNLASATSTGGLVNKMVGRIGDTPVIGAGTYADARCAVSATGKGEAIIRGTVARDVAALMEFKGLSLEEAASCVVHERTPKGTVGLAAVSAKGEVAMPFNTTGMFRACATEDGYSEIAIWPAAKIE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1166 322 Pfam Asparaginase 3 316 IPR000246 GO:0016787
Ssu6g1166 322 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 316 IPR029055 -
Ssu6g1166 322 CDD Asparaginase_2 4 309 - -
Ssu6g1166 322 PANTHER L-ASPARAGINASE 1 316 IPR000246 GO:0016787
Ssu6g1166 322 Gene3D (Glycosyl)asparaginase 187 319 - -
Ssu6g1166 322 PANTHER ISOASPARTYL PEPTIDASE/L-ASPARAGINASE 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1166 Ssu-Chr6 19021892 19023663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1166 5 294 Miscellaneous Gene Families AT4G00590 25.602 9.35e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1166 K13051 - gmx:100799400 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1166 6 19021892 19023663 Ssu6g1166 6 19021892 19023663 ECH