Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1161 atgGAGCTGTGGAACAGAGCTCGAAGCTTTGCGGAAGAAGCAGCGAAACGATCCCAGGAACTGTCGTTGGGAGCTTCCAAATTGAGCGACATGATAGCAGGTACCACGAAAGAGATCGCAGCGCAAGCTTCCAAGCACTTGCCCCAACCTTCTTTCAAAAACGACGTCGATCTCAAGAGTTTTGGCATCACCGAAGAGTTGAGGGACTTCGTTAAAGGGATCACCATCACTACCTTTGAACATTTCCCTCTtccagATGATATGGAATTGTCTGATGTTCTTGCGGTTTCAAATGTTAGGCAGGATTTAACCCAGTGGCAGGAAAAACATGCCAGTCTTGTTCTTTCTACAGTCAAGGAGATTTCAAGATTGAGGTATGAATTGTGTCCACGAGTTATGAAAGAGAGGAAGTTTTGGAGGATATATTTTATACTTGTGAATAATCATATTGCACCCTATGAGAATCGGTACATGGAAGATGATAAACTAAAATCATCTGAACAAGTAAATGATCACAAAGTGATGATGGAACCCTTAAACACCGAATTGATCTCTAATCAAGAGGTGCAGGAAGTGAAAAAAGAGACCAAAACTTCTAATTCATCAATTGAGCATGACTTGGATGTATTTCTTCTGGGAGAAGGAAACAGTGATGATGAGCCCGATGATGGTGATGGGGggtatgatgatgatgatttggACAAACTGATGGCTAATTCGGATGATGAGAAAGGGAAATCATAG 744 0.4046 MELWNRARSFAEEAAKRSQELSLGASKLSDMIAGTTKEIAAQASKHLPQPSFKNDVDLKSFGITEELRDFVKGITITTFEHFPLPDDMELSDVLAVSNVRQDLTQWQEKHASLVLSTVKEISRLRYELCPRVMKERKFWRIYFILVNNHIAPYENRYMEDDKLKSSEQVNDHKVMMEPLNTELISNQEVQEVKKETKTSNSSIEHDLDVFLLGEGNSDDEPDDGDGGYDDDDLDKLMANSDDEKGKS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1161 247 MobiDBLite consensus disorder prediction 231 247 - -
Ssu6g1161 247 MobiDBLite consensus disorder prediction 213 230 - -
Ssu6g1161 247 PANTHER BSD DOMAIN-CONTAINING PROTEIN 54 242 - -
Ssu6g1161 247 MobiDBLite consensus disorder prediction 191 247 - -
Ssu6g1161 247 ProSiteProfiles BSD domain profile. 107 150 IPR005607 -
Ssu6g1161 247 PANTHER BSD DOMAIN PROTEIN 1 46 - -
Ssu6g1161 247 PANTHER BSD DOMAIN PROTEIN 54 242 - -
Ssu6g1161 247 Gene3D BSD domain 80 161 IPR035925 -
Ssu6g1161 247 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 46 - -
Ssu6g1161 247 SUPERFAMILY BSD domain-like 62 155 IPR035925 -
Ssu6g1161 247 Pfam BSD domain 104 150 IPR005607 -
Ssu6g1161 247 SMART wurzfinal6 98 150 IPR005607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1161 Ssu-Chr6 18936890 18942281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1161 3 221 EF-hand Containing Proteins AT1G69030 39.931 7.68e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1161 - - gmx:100527562 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1161 6 18936890 18942281 Ssu6g1161 6 18936890 18942281 ECH