Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1160 ATGTGCAGGGCGGAGTGGGAAGGTTTAATGGGTTTGAAGAGGTGGGAGGGTAAGGTTCGGAAGGTGGGAATGGGGTTAGGGTTGGGGTCAGGTTCGGGTTCGGGTTCGGGGTCATCTCGGTCGAGAATGAAGATGTGGATGATACGGGCAACCACATCGGTGTTACTGTGGACTTGCATCGTTCAGTTAACGGCGTTCGGTGACGTGTGGGGGCCGAGAGTTTTGAAAGGTTGGCCTTCTGTTTCACTCACGAGTCCGCCATCAGGCAATGGATATCGAGCTGCCCTCTCCGCGTCCACCTCTTCTCCCTCCCAAGAGTCGAACCTTTTGTTGTCGCCAGGGGTTTATAAAAACAATGGATACCTGATGGTCTCGTGCAATGGAGGACTCAACCAAATGAGAGCAGCGATAGAGGAGTTGGGCGGGAAGGTGATCAGGCTTCTAAGGCAGAAAGGTCCATTTCTGGTGCTCCATCTGAGGTACGAGATGGACATGTTGGCATTTTCTGGCTGTACTCAAGGTTGTAACGGTGATGAGGTGGAAGAGTTGACAAGAATGAGATATGCTTATCCTTggtggaaagaaaaaataattaattctgatttgaaaagaaaagatggtTTATGCCCTCTAACACCTGAGGAGACTGCCCTTACGCTTAAGGCTCTTGACATTGATCGGAACATTCAAATCTACATTGCAGCTGGGGAAATATATGGAGGGGAAAGGAGAATGGCAAGTCTTGCGAAGGAGTACCCAAAATTGGTCAGGAAGGAAACACTGTTGGAGCCATCCGACCTTCGGTTCTTCCAAAACCATTCATCCCAGATGGCAGCATTGGATTATCTTGTCTCATTAGAGAGTGATATTTTTGTTCCCACATATGATGGAAATATGGCCAAAGTGGTTGAGGGCCATCGCAGACCAAAGGGCATACTCACGCGACTTCTAGATCCACCAGCCAGAAGAGATAAAAGTGTAAGGGATCATATTCTCCAGGAAGCGAGGGCATCCAGTGGGTTTGGTTTAAAGGAGGGAAGGAGGGGGAATAGATTTTAA 1059 0.4721 MCRAEWEGLMGLKRWEGKVRKVGMGLGLGSGSGSGSGSSRSRMKMWMIRATTSVLLWTCIVQLTAFGDVWGPRVLKGWPSVSLTSPPSGNGYRAALSASTSSPSQESNLLLSPGVYKNNGYLMVSCNGGLNQMRAAIEELGGKVIRLLRQKGPFLVLHLRYEMDMLAFSGCTQGCNGDEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLKALDIDRNIQIYIAAGEIYGGERRMASLAKEYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRPKGILTRLLDPPARRDKSVRDHILQEARASSGFGLKEGRRGNRF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1160 352 PANTHER OS02G0726500 PROTEIN-RELATED 136 310 - -
Ssu6g1160 352 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 32 137 - -
Ssu6g1160 352 Pfam GDP-fucose protein O-fucosyltransferase 137 308 IPR019378 -
Ssu6g1160 352 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 136 310 - -
Ssu6g1160 352 PANTHER OS02G0726500 PROTEIN-RELATED 32 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1160 Ssu-Chr6 18906744 18911385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1160 99 308 Miscellaneous Gene Families AT1G22460 43.868 8.83e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1160 K23280 - gmx:100793244 341.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1160 6 18906744 18911385 Ssu6g1160 6 18906744 18911385 ECH