Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1140 ATGAAGATTGTATATTCTCCATGTTGTTGCTCGTGTCATTCCCTGACTGCTACACCATCTCCTTCCTCAGGTTTGTCTCCTCAGTCCTATATCCTCGTTCCTGAACGCGAACACCGTGTCGTGTCGTGTCGCGAGCATGTTCCGCATAAGCAACACCGTGGTCGGCGGCCTCAACATCCTGTCCCTACTCCTGGGCGTAGCCGCTGTGGGCTCCTCCGCCTACATCCACTTCCACCGGGGCGACGGCGCCACCGACTGCCAGAAGGTACTGCAGTACCCGCTCCTGGTCGGCGGCGTCTTCGTGGTGCTGGTCTCCTCGCTGGGAATCGTGGGCTCGCTGTGCCGCGTCAACGTGGCGCTCTACGCTACCTCTTCGTCACGTTCCTGCTCATCGTGGGACTCGCCTTCTTCACCGTCTTCGCGCTCTTCGTCACCAACCGGAAGGTGGGGCAGCAGATTTCCGGCAAGGGCTACGGCGAATACAGGGTCGCCGATTTCTCTCACTGGCTGCAGCGCTACGTCGTCAACAACAAGAACTGGGACGAGGTCAAGAGTTGCTTGATGGACGCGCACGTGTGTCAGAACCTCGCCCTCAACGGTGGTCGCAACAACGACTCCCTCATTTTCAAACACTTATCTACCACCCAGtcTGGGTGCTGTAAGCCACCTGTGTATTGTGGATTCATAATGAAGAATGCTACGTTCTGGGACGTGCCAAAGAAGGGTCCAGCAGCGAATAATTCTGACTGCACCACTTGGAATAATAGGCAGGACAAACTGTGCTACGATTGCAATTCATGCAAGGGAGGAGTGCTGGCCAACATAAGAAACCAGTGGAGACGTCTCACCGTATTCAACGCATGTGTGCTTGTGCTCGTCACCGCCATATACGCCTTGGGCTGCTACGCCGTCAAGAACAACAGATCGGACTCGCGGAGCAACCACCGCAAAGCAGCATGCCCTTGA 966 0.56 MKIVYSPCCCSCHSLTATPSPSSGLSPQSYILVPEREHRVVSCREHVPHKQHRGRRPQHPVPTPGRSRCGLLRLHPLPPGRRRHRLPEGTAVPAPGRRRLRGAGLLAGNRGLAVPRQRGALRYLFVTFLLIVGLAFFTVFALFVTNRKVGQQISGKGYGEYRVADFSHWLQRYVVNNKNWDEVKSCLMDAHVCQNLALNGGRNNDSLIFKHLSTTQSGCCKPPVYCGFIMKNATFWDVPKKGPAANNSDCTTWNNRQDKLCYDCNSCKGGVLANIRNQWRRLTVFNACVLVLVTAIYALGCYAVKNNRSDSRSNHRKAACP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1140 321 PANTHER TETRASPANIN-8-RELATED 123 315 IPR044991 GO:0009734|GO:0016021
Ssu6g1140 321 MobiDBLite consensus disorder prediction 45 68 - -
Ssu6g1140 321 Pfam Tetraspanin family 120 298 IPR018499 GO:0016021
Ssu6g1140 321 MobiDBLite consensus disorder prediction 45 59 - -
Ssu6g1140 321 PANTHER TETRASPANIN-8 123 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1140 Ssu-Chr6 18606751 18613521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1140 106 314 Miscellaneous Gene Families AT1G18520 46.262 8.75e-61 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1140 - - gmx:100815322 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1140 6 18606751 18613521 Ssu6g1140 6 18606751 18613521 ECH