Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1124 ATGCTACAAAACCCACGAGTAGTCCGATATTCCGCTCAACCATTCAATCCTCCAACTCGCACATCAGCACCATCACTTTCGCCATTCCAATTAATACCCACTTCTCCCTCTTTTCCAATCCTCAAACGGCAGTGCAGATTATCTCGTAGAGAGCTCACAATCTTCAGCAACTCTTGCTTGCTACTACTCTTGGGTGCTCAGGCAGTGGATGGATCCAGAGCAAGAGCAGAAGAAGATGTTGCTAACACAAGTAACAGTGATCAACCAGAAGAGAATCTGACTACCACACCCAGCTGCACTGAAAGAAAACCTACGAAACAAGTATTCTTAGACATATCTATTGATGGTGAACCTGTTGGTCGCATTACTATAGGGCTCTATGGAGATGAGGTCCCTGCAGGAGTTGATAGGTTTAGTAAGATTGTAAGCGGAGCTGCTGGCATTAGCTATAGAAGAAAAGAGTTTGTCAAAATCATGCCCAATTATGTCCAACATGGTGGTCTTAGATCGTATGGCGTGGATGTTGAACTTGCTACGAGGACAGGTAGCAACTTGGCAGCTGATACTCTTGTTCAGGAATGGGAGAGGGAGTATGAGAGATGTCCTGGGACTAAAAACGTGGCTGGAAGTGTAGGCATTATTGTGAGAAACCCATCAAAACCACCTCCGAAGTTGAAGCTGGTAGCTAAACAAGGGAAGCTGGAGATTGATCAAGAAGAAGTAGGAACTGATCCCAATGGTACACAATTTGTCATTGCTACAAAGGATTCACCAGAATTGGATGCATCGTCTCTGGTAATCGGAAGAGTAATAGGAGGGATGGAGGTTGTGGAGAGGATCGGTCAGGTAAAAACTGTACAAGAGAACACAGGATCTCCATATTTTAGGGTAGCGAAGCTAATAGGAGACAAGAGAGCTGTTGTAGCAGAAAGAGGATTCAACCGCCCTTATTCGAAGGTCATCGTCACAAACTGCGGTTTAATGGAGTAA 990 0.4485 MLQNPRVVRYSAQPFNPPTRTSAPSLSPFQLIPTSPSFPILKRQCRLSRRELTIFSNSCLLLLLGAQAVDGSRARAEEDVANTSNSDQPEENLTTTPSCTERKPTKQVFLDISIDGEPVGRITIGLYGDEVPAGVDRFSKIVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDVELATRTGSNLAADTLVQEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLVAKQGKLEIDQEEVGTDPNGTQFVIATKDSPELDASSLVIGRVIGGMEVVERIGQVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1124 329 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 288 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 234 249 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 262 277 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 249 261 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 327 IPR002130 GO:0000413|GO:0003755
Ssu6g1124 329 MobiDBLite consensus disorder prediction 75 100 - -
Ssu6g1124 329 MobiDBLite consensus disorder prediction 78 100 - -
Ssu6g1124 329 Gene3D - 96 329 IPR029000 -
Ssu6g1124 329 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 329 IPR044185 -
Ssu6g1124 329 SUPERFAMILY Cyclophilin-like 104 328 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1124 Ssu-Chr6 18364598 18365764 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1124 K03768 - gmx:100800469 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1124 6 18364598 18365764 Ssu6g1124 6 18364598 18365764 ECH