Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1113 ATGGCGAAACCTCGCAAGCCCAAGAACAACGAAGAACCCAAGCCCGAAAACTCTGGCGCCCTAGTTCATCACCAAAAGCTATGCCTCTCCATCGACATGGATAAACGCCTAATCCACGGATATACTGAATTGGAGATTGCGGTGCCGGAGATTGGGATTGTAGGGTTGCACGCGGAGAACTTAGAGATTGAGAGTGTTTGGGTTGATGGTGAGCCCACGGAGTTTGAGTATTACCCGCACCATCAGCAGCAGTTGGAGGATGATAGGAGATTTAGCTCTGTGTGTTCTCCTAGTTCTGCTGCTGATGCTGCTGTCTCACTGTACATCTCCGCTCTGGAGAAGGAACTGGTGCccaattttctcattaattgttGTAAACCTTCCAAGACTGAGGCTGAACAACAGCCGGAGCAACCCGTTTCGGAAAACGGGTTTCACTCCTCGGCCGAGCCCAAGCAGAATGTGAGAATTGTTCGTATCGACTATCGGATAGAGAAGGCAGAGACAGGAATCCACTTCAGAAATAATGTTCTTCATACTGATAATCAGTTAAGGAGAGCAAGGTGTTGGTTCCCTTGTATAGATGACAATTCACAACGATGCTGCTACGACCTGGAGTTCACTGTAGCACACAATCTCATGGCTGTCAGTACGGGAAGCTTGCTTTATCAGGTCTTAAGCAAGGACAATCCTCCTCAGAAAACATATGTCTATAAATTGGATGTTCCAGTTGCTGCAAGGTGGATATCTTTGGCTGTTGCCCCATTTGAAATTCTTCCTGATCACCAATTTAGTCCCATATCACATATGTGTTTTCTGCCTAATCTGTCAAAGATGCGGAATACAGTGGAATTTTTCCACAGTGCCTTCAGCTGCTATAAGGATTATCTTTCTGTAGACTTCCCGTTTGACTCGTATACTCAAGTTTTCATAGAGCCGGAGATGGCAGTGTCATCATTGAGTTTAGGAGCCTCTATGAGTATATTTACTTCTCAAGTTTTGTTTGATGAGAAGGTTATTGACCAGACTATTGATACAAGAGTAAAACTTGCATATGCTCTTGCAAGACAGTGGTTTGGTGTGTATATCACTCCTGAGACACCGAACGATGAGTGGCTCTTGGATGGTCTTGCTGGTTTCTTgacagatttttttattaagaaacatttgGGAAATAATGAGGCACGGTACCGGAGATACaagGCAAATTGTGCTGTTTGCAAAGTTGATAATGGTGGAGCGACAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGTATGGAAAAATAAGATCATGGAAGTCTGTGGCAGTTATTCAGATGTTGGAAAAGCAAATGGGTCCTGAATCTTTCCGTAGAATTTTGCAAACTATAGTTTCTCGGGGTCAAGATAAAACACGGTCCATGAAAACTCTTAGTACTAAGGAGTTTCGACATTTTGCTAATAAGGTTGGGAATCTTGAACGCCCATTTCTTAAAGATTTCTTTCCTCGGTGGGTTGGTTGTTGTGGATGTCCTGTTTTAagGATGGGGTTTTCCTATAACAAAAGGAAGAATATGGTTGAATTGGCTGTGTTGCGGGGATGTACAGCATTGCAGACTTCAAGTACATCCATTCTTGATATTAATCCGGATACAGAAAATCGAGATGGAGATACTGGATGGCCTGGTATGATGAGCATCAGGGTATATGAACTTGATGGTATGTATGACCATCCAATTCTACCAATGGCTGGAGAAGCATGGCAACTATTGGAAATACAATGCCACTCAAAGCTTGCTGCTAGGCGCTTTCAGAAGCCCAAGAAAGGTTTAAAACTTGATGGCTCTGATGATAATGGTGATGTGCCTTCTGTGGATATGCGTTCCAATACCGAATCCCCTTTATTATGGATCAGAGCAGATCCTGATATGGAGTACCTTGCTGAGGTTCATTTTAACCAACCAGTTCAGATGTGGATCAATCAATTAGAGAAGGACAAAGATGTTATTGCTCAGGCGCAAGCAATTGCAGCCCTTGAGGCATCGCCCCAGCTATCATTTTCTATTGTAAATGCCCTAAACAATTTTCTCAGTGACTCAAAGGCTTTTTGGAGAGTACGGATTGAAGCAGCATTTGCATTGGCAAATTCAGCATCTGAGGAAACTGATTTTTCTGGTCTACTCCATTTGGTGAAATTTTACAAGAATCGAAGGTTTGATCCTGACATTGGACTCCCAAAGCCAAatgattttcatgattttgctgAGTATTTTGTTCTTGAGGCTATTCCACATGCTGTTGCCATGGTTAGAGCTGCTGACAAGAAAAGCCCAAGAGAGGCTATTGAGTTTGTTTTACAGCTATTGAAGTACAATGACAACAACGGGAACCCTTACTCAGATGTCTTCTGGCTTGCTGCATTGGTCCAGTCAGTTGGTGAGCTTGAGTTTGGGCAACAGAGTATTCTCTTATTGTCATCACTTCTCAAACGCATTGACCGGCTTCTACAATTTGATAGTTTCATGCCAAGCTACAATGGAATCTTGACTATCAGTTGTATCCGGACATTGACCCAGATTGCTTTAAAGCTTTCGGGGTTCATTCCTCTTGATCGAGTTTATGAACTTGTAAAGCCTTTTCGGGACTTAAAGGCATTGTGGCAAGTTCGAATTGAAGCAAGTAGAGCACTCCTTGATCTTGAATTCCACTGCAAGGGCATGGATTCAGCATtgcttttatttatcaaatacatAGAGGAGGAGCATTCCTTAAGAGGGCAGTTAAAACTGGCCACCCATGTTATGAGGCTATGTCAGATGAGGGATGGATTGAATTCAAATGACGAAATTACAAGCCAAACTCTTGTCTTTATGCTTAATTTACTGGAAGGGCGTATGGCTTTTAATAATGTCTGTCTCCGGCATTACTTGTTCTGCATATTACAAATACTTGCAAGAAGACCCCCAACTCTTCATGGGATTCCCAGAGAAAATAGAACGTTGCATATGAGTCTTACAGAAGCTTGTAACTATCAGAAGAACATGTTTGTTCTTGATTCAGATAGCAAAGTTTTGGATCTGCCAAGCTCGACCCAAAACCTCACACAAAATTTGGGCCTGACAACGGAGCGTTTGAGGGATGCGCTTGAAGCTTCTAAGGACCAACCCTGTGAAGCTCCCACACAGGTGCATGTTGAAGCTCTAAAGGAAGTGCCTCTAGAGAAACCCAAAGAGGTATTTACTGAATTTCCTCAGGAAGCACCAATTGAAGCTACAAATGAAGTTTCCAAGGAAGCTGATACTGTATCCAATAGCCATGAAAGAAAGAGGACCATTAAAATCAAGGTCAAACAATCTTCTGCCACCAGTAGGGCTGATACTGATAATCAAGTGGTTGAACGTTCTTTAGGTGGTCGAAATGAAATGGATCATGGAGCTAGCAGTTCAGTTTCTGTAGATGCACCCCAGAGGAATTTTGCGGAGACTCTTAGCATCAGTAATCACAATATTGACGAAGTTAATTCTTGGCATGATCGTGGTTCGCGCATGACTGCCAGCATTGGTAGTGCAAAGTTTTTGAGTGATGGTGATGAATTGGTCAAAGAACTCCAGTGCACTGCTGATTCAAGTATAGTTTATTCTCAACCTCAGGCAGAAGATCCATCATCATCCAGTGTTATCCAGGATAACAATATTGATGCTGATGCACGACGATATGCCAGTCTTCAAACTCTTTCAGTTGCAAGATTTGATCCTGAAGGAGAATCATTAGGTAAAGAAATTTCTGCTCGTGGAAAGGAAAAACATAAAAGCAAGGAAAAGAAACGGAAACGGGAAAGTAATAAAGGACACCATGATGATCCAGAATATTTGGAGCGAAAACgattaaagaaagagaaaaaacgCCGGGAAAAAGAAATGGCAAAACTGCAGAGTGATGAAGCAAAGAGATCCTCCATAGACTTGTCAAGTAAGAAAGAGGAACCCGTAGTGGACGTTGCTAGACAGGTGAAATCTATTGAACCCAGTGGATATAATtctaaattagaaattaaaaagattgaTACCAAACCGGAGCCACCTGAAGGCACATCTGGTGCGCCAAAAATtcgaattaaaattaaaaaccgaATGCTCAACAAGTCATAG 4155 0.4123 MAKPRKPKNNEEPKPENSGALVHHQKLCLSIDMDKRLIHGYTELEIAVPEIGIVGLHAENLEIESVWVDGEPTEFEYYPHHQQQLEDDRRFSSVCSPSSAADAAVSLYISALEKELVPNFLINCCKPSKTEAEQQPEQPVSENGFHSSAEPKQNVRIVRIDYRIEKAETGIHFRNNVLHTDNQLRRARCWFPCIDDNSQRCCYDLEFTVAHNLMAVSTGSLLYQVLSKDNPPQKTYVYKLDVPVAARWISLAVAPFEILPDHQFSPISHMCFLPNLSKMRNTVEFFHSAFSCYKDYLSVDFPFDSYTQVFIEPEMAVSSLSLGASMSIFTSQVLFDEKVIDQTIDTRVKLAYALARQWFGVYITPETPNDEWLLDGLAGFLTDFFIKKHLGNNEARYRRYKANCAVCKVDNGGATALSCSASCKDLYGTQCIGLYGKIRSWKSVAVIQMLEKQMGPESFRRILQTIVSRGQDKTRSMKTLSTKEFRHFANKVGNLERPFLKDFFPRWVGCCGCPVLRMGFSYNKRKNMVELAVLRGCTALQTSSTSILDINPDTENRDGDTGWPGMMSIRVYELDGMYDHPILPMAGEAWQLLEIQCHSKLAARRFQKPKKGLKLDGSDDNGDVPSVDMRSNTESPLLWIRADPDMEYLAEVHFNQPVQMWINQLEKDKDVIAQAQAIAALEASPQLSFSIVNALNNFLSDSKAFWRVRIEAAFALANSASEETDFSGLLHLVKFYKNRRFDPDIGLPKPNDFHDFAEYFVLEAIPHAVAMVRAADKKSPREAIEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILLLSSLLKRIDRLLQFDSFMPSYNGILTISCIRTLTQIALKLSGFIPLDRVYELVKPFRDLKALWQVRIEASRALLDLEFHCKGMDSALLLFIKYIEEEHSLRGQLKLATHVMRLCQMRDGLNSNDEITSQTLVFMLNLLEGRMAFNNVCLRHYLFCILQILARRPPTLHGIPRENRTLHMSLTEACNYQKNMFVLDSDSKVLDLPSSTQNLTQNLGLTTERLRDALEASKDQPCEAPTQVHVEALKEVPLEKPKEVFTEFPQEAPIEATNEVSKEADTVSNSHERKRTIKIKVKQSSATSRADTDNQVVERSLGGRNEMDHGASSSVSVDAPQRNFAETLSISNHNIDEVNSWHDRGSRMTASIGSAKFLSDGDELVKELQCTADSSIVYSQPQAEDPSSSSVIQDNNIDADARRYASLQTLSVARFDPEGESLGKEISARGKEKHKSKEKKRKRESNKGHHDDPEYLERKRLKKEKKRREKEMAKLQSDEAKRSSIDLSSKKEEPVVDVARQVKSIEPSGYNSKLEIKKIDTKPEPPEGTSGAPKIRIKIKNRMLNKS 1384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1113 1384 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 19 1316 IPR037813 GO:0005669
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1119 1155 - -
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1351 1371 - -
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1119 1136 - -
Ssu6g1113 1384 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 18 254 IPR042097 -
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1305 1336 - -
Ssu6g1113 1384 CDD M1_like_TAF2 24 508 - -
Ssu6g1113 1384 SUPERFAMILY ARM repeat 450 989 IPR016024 -
Ssu6g1113 1384 Pfam Peptidase family M1 domain 284 481 IPR014782 GO:0008237|GO:0008270
Ssu6g1113 1384 Gene3D tricorn interacting facor f3 domain 21 253 IPR042097 -
Ssu6g1113 1384 Coils Coil 1293 1320 - -
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1282 1297 - -
Ssu6g1113 1384 MobiDBLite consensus disorder prediction 1258 1337 - -
Ssu6g1113 1384 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 274 517 - -
Ssu6g1113 1384 Gene3D Neutral Protease Domain 2 262 510 IPR027268 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1113 K03128 - gmx:100792795 2526.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1113 6 18201221 18227834 Ssu6g1113 6 18201221 18227834 ECH