Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1111 ATGGGTGAAAGCTTCGATGACCTAAATAATAAGCTTCCTGAGCTCAAATTAGATTCTAAGCAAGCGCAAGgatttctatcatttttcaaaaccCTACCTGATGATCCAAGGGCTGTACGGTTTTTTGACCGCCGGGACTATTATACTGCCCATGGCGAGAATGCAACTTTCATTGCAAAGACCTACTACCACACTACTACTGCTATGCGACAGCTGGGTAGTGGATCAAATGCTCTTTCCAGTGTAAGTGTTAGCAGGAACATGTTTGAAACAATTGCTCGCGATCTCCTTTTGGAGAGAACAGACCATACTCTGGAGCTTTATGAAGGTAGTGGTTCTAATTGGAGACTGGTCAAAAGTGGAACACCTGGTAATATTGGCAGTTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCAGTTGTTGTTGCATTGTCACTTAACTTCCGTGAAAATGGGTGCACCATTGGGTTAGGATTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAATTCCTTGATGACAGTCACTTCACGAATGTCGAATCAGCGTTTGTTGCACTTGGCTGCAAAGAGTGCCTTCTGCCTATAGAGTGTGGCAAATCTATTGAAAATAGATTGTTGTGTGATGTGTTGACTAAATGTGGTGTGATGTTAACTGAGAAAAAGAAATCTGAATTTAAAACCAGGGATCTGGTACAGGATCTTGGCAGGCTTGTTAAAGGTCCTATTGAACCAGTTCGAGATTTAGTGTCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGCATTACTATCTTATGCAGAGTTACTGGCAGATGAAAgcaattatgaaaattatactcTTCGTAGGTACAATCTTGACAGCTACATGAGGTTAGATTCTGCAGCCATGAGAGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAGAATTTCAGTTTGTTTGGTCTCATGAATAGGACTTGTACTGCTGGAATGGGAAAACGGTTATTGCACATCTGGCTAAAACAACCATTAGTagatgtaaaagaaattaattccAGGCTGGATGTAGTACAAGCATTTGTAGAGGACACTGTTCTTCGACAAGATCTAAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGATTGATGCACAATCTTCAGAAACGACGAGCTGGTCTGCAACATATTGTTAAACTTTATCAGTCAAGTATCAGACTCCCTTACATCAAAAGTGCATTGGAAAGATATGATGGacacttttcctcaatgatgaggAGTAGGTATTTGGAGCCTCTGGAGTTATGGACTGATGATGAGCACCTGAACAAATTCATTGGGCTTGTAGAAGCTTCTGTTGACCTTGATCAACTGGAGAACAGGGAATACATGATTTCTCCGAGCTATGATTCTACACTAGCTAACCTAAAGGAACAGCAAGAATTACTAGAGAGCCAAATATATAACTTGCATAGGCAAACTGCTGATGATCTTGATCTGCCTATAGATAAGGCATTAAAGTTAGACAAGGGCACACAATTTGGACATGTTTTCAGAATCACAAAGAAGGAAGAGCCAAAAATAAGGAAGAAGCTCAATACCCAGTTTATTGTACTGGAAACCCGTAAAGATGGAGTGAAATTTACCAACACGAAGCTCAAAAAGCTAGGAGATCAATATCAACAAATTCTTGAGGAGTACAAAAGTTGTCAAAAAAAGTTAGTTGATAGAGTAGTTCAAACTGCGGCAACTTTCTCTGAGGTGTTTGAATCTTTAGCTGAAATAATTTCCGAATTGGATGTATTACTGAGCTTTGCTGATTTGGCTTCTAGTTGTCCTACTCCCTACACAAGGCCTGACATCACTCTGTCGGAAGAAGGAGATATTATTTTAGAAGGCTGCAGACACCCTTGTGTAGAGGCACAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTGTCAGAGGAAAAACCTGGTTTCAAATAATAACAGGGCCTAACATGGGTGGGAAATCAACATTCATCCGGCAGGTGGGTGTGAATATTTTGATGGCACAAGTTGGTTCCTTTGTTCCTTGTGACAGAGCCAGCATATCTGTTCGTGATTGCATTTTTGCCCGCATTGGTGCTGGTGACTGCCAACTTCGTGGAGTTTCTACCTTCATGCAAGAAATGCTCGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCTTTGATAATCATTGATGAGTTGGGACGTGGGACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCATATTGTTGAAGTAATCAAAGCACCTACTTTGTTTGCCACCCACTTTCATGAACTGACTGCATTAGCCCTTGAAAATGTAAGCAATGATCCACAGAACCAAATTGTTGGTGTGGCAAACTATCATGTTAGTGCACATATTGACCCATCAACTCGAAAGCTAACTATGCTATACAAGGTTGAACCTGGAGCTTgtgatcagagttttggtatTCATGTTGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTTACCCTAGCTAGAGAAAAGGCAGCAGAATTAGAAGACTTTTCTCCTTCTGCAACATCCTTAACTGATTCTACACAAGAGGTGGGTTCTAAACGTAAGAGAGTATTTGAACCCGATGACATGTCTCAAGGGGCTGCAAGGGCTCGCCAATTTCTCGAAGCATTTGTTGCTTTGCCACTAGAAACCATGGACAAAGTGCAAGCTTTGCAAGAAGTAAAGAAGTTAACAGACACCTTGGAGAAGGATGCAAAAAACTGTCATTGGCTGCAAAAGTTCTTGTAG 2829 0.397 MGESFDDLNNKLPELKLDSKQAQGFLSFFKTLPDDPRAVRFFDRRDYYTAHGENATFIAKTYYHTTTAMRQLGSGSNALSSVSVSRNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPGNIGSFEDVLFANSEMQDSPVVVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESAFVALGCKECLLPIECGKSIENRLLCDVLTKCGVMLTEKKKSEFKTRDLVQDLGRLVKGPIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENYTLRRYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHIWLKQPLVDVKEINSRLDVVQAFVEDTVLRQDLRQHLKRISDIERLMHNLQKRRAGLQHIVKLYQSSIRLPYIKSALERYDGHFSSMMRSRYLEPLELWTDDEHLNKFIGLVEASVDLDQLENREYMISPSYDSTLANLKEQQELLESQIYNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSEVFESLAEIISELDVLLSFADLASSCPTPYTRPDITLSEEGDIILEGCRHPCVEAQDWVNFIPNDCKLVRGKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARIGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSNDPQNQIVGVANYHVSAHIDPSTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPSATSLTDSTQEVGSKRKRVFEPDDMSQGAARARQFLEAFVALPLETMDKVQALQEVKKLTDTLEKDAKNCHWLQKFL 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1111 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 862 IPR027417 -
Ssu6g1111 942 PIRSF MSH2 8 942 IPR011184 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Coils Coil 371 391 - -
Ssu6g1111 942 Gene3D - 295 523 - -
Ssu6g1111 942 Gene3D - 524 617 - -
Ssu6g1111 942 SUPERFAMILY DNA repair protein MutS, domain III 298 612 IPR036187 -
Ssu6g1111 942 SMART DNAend 315 643 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Gene3D MutS, connector domain 123 292 IPR036678 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Pfam MutS domain III 301 607 IPR007696 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Gene3D DNA repair protein MutS, domain I 9 122 IPR016151 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 CDD ABC_MSH2_euk 631 861 - -
Ssu6g1111 942 Gene3D - 618 939 IPR027417 -
Ssu6g1111 942 SMART mutATP5 660 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Coils Coil 554 574 - -
Ssu6g1111 942 Pfam MutS domain V 663 861 IPR000432 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 24 923 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Ssu6g1111 942 Coils Coil 474 494 - -
Ssu6g1111 942 Pfam MutS domain I 24 129 IPR007695 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 Pfam MutS domain II 144 284 IPR007860 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 923 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Ssu6g1111 942 Pfam MutS family domain IV 470 567 IPR007861 GO:0005524|GO:0006298|GO:0030983
Ssu6g1111 942 ProSitePatterns DNA mismatch repair proteins mutS family signature. 741 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1111 Ssu-Chr6 18151046 18165131 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1111 K08735 - gmx:100792272 1799.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1111 6 18151046 18165131 Ssu6g1111 6 18151046 18165131 ECH