Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1107 ATGGGTAGTGGAGCTGTTGAAACGAATCGTTTAACAAACGGGGAAACTGAGAACAGTCTTCACAAGCAAGCTTCTCAAGCTCCTGCACGCGACAACGTGCTTTCTGATGCCAATGATGCAGTTGCTGACCCTGATGCCCCTGCGAAGAGGGCCAGGCTGCAGAAGGAATTGACCTTCCAGGACATGTATCAAAATGATGGCGTGTTTGACGATGACGATGATGATAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTGTGGAATTGGAAATCAAAAAGTGGTTCTGCAAAAATTGTACTATGGTTAACCTCGATCGTTATAACTGTTGTCAAATATGTGGAGAGCATAGGGATTCTAAAATCGTCAGCCATGGGTTTTTTGCATCTCCTTTTGCCCAAGATGAGGATCTGACTGAGGTCCAGGGAAATGTAAAAGGACTGAAAGATGTTGGCTCAGAGGAATCAGTGGCTAATGGTTCTACGGCAATCGGCTTTGATGAGAGAATGTTGCTACATGCAGAAGTTGAAAAGAAATCACCTCCACATCCTGAGAGGCCAGATCGTCTTCAAGCCATTGCTGCTAGTCTTACTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTACTGTTCATTCGTTGGAGCATATTGAATCTGTGGAAGGTACAACTGAATCAATTTCTAGTTATTTCACTGCTGACACATACGCCAATCAGCATTCAGCACTTGCTGCTAGGTTGGCAGCTGGGTTATGTGCTGATCTGGCATCAGCAATTGTTTCTGGGCGTGCCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACATGCAATGGGGTTCTGCCTTCACAATAATGCTGCGGTGGCAGCATTGGCTGCTCAAGCTGCAGGGGCTAGGAAGGTGCTAATTTTGGATTGGGATGTTCATCATGGAAATGGGACACAGGAAATATTTGAACGAAACAAATCGGTCTTGTATATATCATTGCATAGACACGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCTGAAGAGGTTGGTAGTATGGGTGCGGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTTGGTGACAATGACTACAGTTTTACATTTCAGCATGTTGTCCTTCCTATAGCTTCTGAGTTCAATCCAGATTTTACCATAGTATCTGCTGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGTGATGTTACTCCCTCTGGCTATGCACATATGACGCATATGTTGAATGCCCTTTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGGTTTGTAGCTCACATCTTTCATACTAGTTCATtctag 1398 0.4435 MGSGAVETNRLTNGETENSLHKQASQAPARDNVLSDANDAVADPDAPAKRARLQKELTFQDMYQNDGVFDDDDDDSDWEPFQLHKCVELEIKKWFCKNCTMVNLDRYNCCQICGEHRDSKIVSHGFFASPFAQDEDLTEVQGNVKGLKDVGSEESVANGSTAIGFDERMLLHAEVEKKSPPHPERPDRLQAIAASLTRAGIFPGKCYSIPAREITPEELITVHSLEHIESVEGTTESISSYFTADTYANQHSALAARLAAGLCADLASAIVSGRAKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFERNKSVLYISLHRHEGGKFYPGTGAAEEVGSMGAEGYCVNIPWSRGGVGDNDYSFTFQHVVLPIASEFNPDFTIVSAGFDAARGDPLGCCDVTPSGYAHMTHMLNALSGGKLLVILEGGFVAHIFHTSSF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1107 465 PANTHER HISTONE DEACETYLASE-RELATED 18 458 - -
Ssu6g1107 465 CDD HDAC_classII 182 454 - -
Ssu6g1107 465 MobiDBLite consensus disorder prediction 1 48 - -
Ssu6g1107 465 PRINTS Histone deacetylase superfamily signature 405 415 IPR000286 -
Ssu6g1107 465 PRINTS Histone deacetylase superfamily signature 284 307 IPR000286 -
Ssu6g1107 465 PRINTS Histone deacetylase superfamily signature 317 332 IPR000286 -
Ssu6g1107 465 SUPERFAMILY Arginase/deacetylase 159 456 IPR023696 -
Ssu6g1107 465 ProSitePatterns Zinc finger RanBP2-type signature. 94 113 IPR001876 -
Ssu6g1107 465 PANTHER HISTONE DEACETYLASE 18 458 - -
Ssu6g1107 465 Gene3D Histone deacetylase domain 158 463 IPR037138 -
Ssu6g1107 465 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g1107 465 Pfam Histone deacetylase domain 182 458 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1107 Ssu-Chr6 18105580 18114534 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1107 - - gmx:100804724 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1107 6 18105580 18114534 Ssu6g1107 6 18105580 18114534 ECH