Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1101 ATGGTGGCAACTGCTGCTTCTTCATCATTTTTCCCTGTTATTTCACCCTCACCGGACTCTGGTGGAGCAGGCAACATACTTGGTGTTGGTGGAGGGCATACGAAccttggaggactaaaatccAAACCTGCGTCTTCTGGTGGCTTGCAGGTTAAGGCAAAGGCGCAAGCCCCTTCGAAAATTAATGGAAGCACAGTTGCTACATCTGTAGAAAGCTTGAAGCATGAGGATGATTTACCTTCGCCTCCCCCCAGGACTTTTATTAACCAGTTACCTGATTGGAGCATGCTTCTTGCTGCTATCACAACAATTTTCTTGGCCGCTGAAAAGCAGTGGATGATGCTTGATTGGAAGCCAAGGCGACCTGACATGCTTATTGACCCCTTTGGGATAGGAAAAATTGTTCAGGATGGTCTCGTGTTCCGTGAAAACTTTTCTATTAGATCATATGAGATTGGTGCTGATCGAACGGCATCTATAGAAACAGTAATGAACCATTTGCAGGAAACTGCACTTAATCATGTTAAGACTGCTGGACTTCTTGGTGATGGCTTTGGTTCCACACCAGAAATGTGCAAAAAGAACTTGATATGGGTAGTTACCCGGATGCAGGTTGTGGTCGATCGTTATCCTACATGGGGTGACATTGTTCAAGTAGACACTTGGGTTTCTGCATCAGGGAAGAATTGTATGCGTCGTGATTGGGTTTTACGTGACTGTAAAACTGGTGAAATCTTGACAAGAGCCTCCAGTGTTTGGGTCATGATGAATAAGCTGACAAGGAGGCTGTCTAAAATTCCACAAGAAGTCAGAGAGGAGATAGGATCTTATTTTGTGGATTCTGATCCAATTCTGGAGGAGGATAACAGAAAACTGCTCAAACTTGATGACAACACAGCAGATTACATTCGTACTGGTTTAAGTCCTAGATGGAGTGATCTAGATATCAATCAGCATGTCAACAATGTGAAGTACATTGGATGGATTCTGGAGAGTGCTCCGCAGCCAATCTTGGAGAGTCATGAGCTTTCTGCCATGACTTTAGAGTATAGGAGGGAGTGTGGTAGGGACAGTGTGCTGCATTCCCTGACTGCTGTGTCTGGTGCCGACATTGGCAATCTAGCTCACAGCGGACATGTTGAGTGCAAGCATTTGCTTCGACTAGAAAATGGTGCTGAAATTGTGAGGGGCAGGACTGAGTGGAGGCCCAAACCTGTGAACAACTTTGGAATTGTGAATCAGGTTCCAGCAGAAAGCACCTAA 1263 0.4458 MVATAASSSFFPVISPSPDSGGAGNILGVGGGHTNLGGLKSKPASSGGLQVKAKAQAPSKINGSTVATSVESLKHEDDLPSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRENFSIRSYEIGADRTASIETVMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGDIVQVDTWVSASGKNCMRRDWVLRDCKTGEILTRASSVWVMMNKLTRRLSKIPQEVREEIGSYFVDSDPILEEDNRKLLKLDDNTADYIRTGLSPRWSDLDINQHVNNVKYIGWILESAPQPILESHELSAMTLEYRRECGRDSVLHSLTAVSGADIGNLAHSGHVECKHLLRLENGAEIVRGRTEWRPKPVNNFGIVNQVPAEST 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1101 420 CDD 4HBT 141 257 - -
Ssu6g1101 420 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 301 406 IPR029069 -
Ssu6g1101 420 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 135 287 IPR029069 -
Ssu6g1101 420 Pfam Acyl-ATP thioesterase 1 127 IPR021113 GO:0016790
Ssu6g1101 420 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 406 IPR045023 GO:0006633|GO:0016297
Ssu6g1101 420 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 1 406 - -
Ssu6g1101 420 Gene3D Hotdog Thioesterase 131 408 - -
Ssu6g1101 420 MobiDBLite consensus disorder prediction 37 65 - -
Ssu6g1101 420 Pfam Acyl-ACP thioesterase 138 402 IPR002864 GO:0006633|GO:0016790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1101 Ssu-Chr6 17961152 17964401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1101 1 410 Acyl Lipid Metabolism Gene Families AT1G08510 76.087 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1101 K10781 - gmx:100170693 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1101 6 17961152 17964401 Ssu6g1101 6 17961152 17964401 ECH