Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0644 ATGGCGAGGCTGCTTCGTAACACTTCCCTTCTCACACACTCCCTACTCGTCCCTAAGGGTTTTAAACTAGGAATATTTGGCACTTCTCAGATTTTGAGCTTTTCGTCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGCCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGCTCTGTCTCACCGAAAAATGTACCTGTTGTATCTACTGGTTCTTTTGCTCTTGATATAGCACTAGGAATTGGTGGACTTCCGAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAGCAAGGagGTTATTGTGTCTTTGTTGATGCCGAACACGCCCTTGATAAGACACTTGCGGAGTCTATTGGTGTGAATACAGCGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTTAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTACCTAAAGGTGAGCTTGATGGTGAAATGGGCGATGCTCACGTGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGAAAATTGAGCCATGCCTTGTCACTTTCTcaaagtatattaatttttataaaccaGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCCACGGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCTGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAgATTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTGGCCCCTCCATTTAAAACTGCTGAGTTTGAACTTCAATTTGGCAAGGGTATATGTAGAGAATCAGAGATTATAGATTTGAGTGTAAAACGCAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGACCAGAATTTCCGCGGTAAGGATGCCCTAAAGACTTTCCTAGCTGAGAACTGTAGTACATTAGAAGAACTTGAAATGAAGCTCCGAGAGAAGCTTCTTAATGCTGAGGCAGAAAAAACACAAGAGTCAGATGTAATTAATGGAGATGTTACAGAAGATATTGCGACAGTTGATTCCACTGACGAAGAAGCTGCAGCTGTTGTAGAAGCATGA 1260 0.4254 MARLLRNTSLLTHSLLVPKGFKLGIFGTSQILSFSSKGRRRSKSDGSDSGEENMPKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDIALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTANLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHVAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICRESEIIDLSVKRKLILKAGAMYYYNDQNFRGKDALKTFLAENCSTLEELEMKLREKLLNAEAEKTQESDVINGDVTEDIATVDSTDEEAAAVVEA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0644 419 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Ssu6g0644 419 Gene3D - 87 390 IPR027417 -
Ssu6g0644 419 Coils Coil 367 390 - -
Ssu6g0644 419 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu6g0644 419 PANTHER RECA 1 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 410 - -
Ssu6g0644 419 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ssu6g0644 419 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Ssu6g0644 419 SMART AAA_5 110 284 IPR003593 -
Ssu6g0644 419 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Ssu6g0644 419 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Ssu6g0644 419 CDD recA 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0644 Ssu-Chr6 10007731 10013537 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0644 K03553 - gmx:100781271 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0644 6 10007731 10013537 Ssu6g0644 6 10007731 10013537 ECH
Ssu6g0644 6 10007731 10013537 Ssu1g1535 1 36487049 36493509 PCT