Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0586 ATGGCACGGTTGTCACTGGTGATTCTTCTGTTCTGCGTCGCCGCCGTCGCAGTCGCCGGCACTACATTCGACGAGGCCAACCCTATCCGTCTGGTGTCGGACTTGGAGTCGCGTGTCCTCGACCACGGCAAGCGCTACCACTCCGTCGACGAGATCAGGCACCGCTTCCGGATCTTCTCCGATAATCTCAGACTCATCAGATCCGCCAACGAGAGGCCTCGAACCTACACTCTCGGCGTTAACCATTTTGCTGACTGGACTTGGGAGGAGTTCGCGAGACACAGACTCGGCGCGGCTCAGAATTGCTCCGCCACGCACAAAGGCAACCACAGACTCACCGATGCTGTTCTTCCTGACGAGAAAGACTGGAGAAAAGAAGGTATAGTCAGCGAAGTTAAAGATCAAGGCCACTGCGGATCTTGCTGGACATTCAGCACAACTGGAGCCTTGGAGGCAGCTTATGCACAGGCCTTTGGGAAAAATATCTCTCTTTCTGAGCAGCAGCTAGTGGATTGTGCCCGTGCTTTCAATAACTTTGGCTGTAATGGTGGGTTGCCGTCCCAAGCCTTtgaatacattaaatataatggTGGCCTTGACACAGAGGAAGCATATCCCTACACCGGAAAAAATGGTGTCTGCAAATTTACTGCTGAAAACGTTGCCGTTCAAGTCATTGACTCTGTCAATATCACCTTGGGTGCTGAGGATGAGTTGAAACATGCAGTTGCCTTTGTTCGGCCTGTTAGTGTGGCATTTGAGGTGGTGAGTGACTTCCGGTTCTACAAGAAAGGAGTTTACACTAGTGACACTTGTGGCAGCAAGCCCATGGATGTAAATCATGCTGTTCTTGCTGTTGGGTACGGAGTTGAAGATGGTGTTCCATATTGGATCATTAAAAATTCATGGGGAGATAACTGGGGTGACAATGGCTACTTCAAGATGGAATTGGGGAAGAATATGTGCGGTGTTGCAACTTGTGCATCGTATCCTGTTGTAGCTTAA 1005 0.4955 MARLSLVILLFCVAAVAVAGTTFDEANPIRLVSDLESRVLDHGKRYHSVDEIRHRFRIFSDNLRLIRSANERPRTYTLGVNHFADWTWEEFARHRLGAAQNCSATHKGNHRLTDAVLPDEKDWRKEGIVSEVKDQGHCGSCWTFSTTGALEAAYAQAFGKNISLSEQQLVDCARAFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKNGVCKFTAENVAVQVIDSVNITLGAEDELKHAVAFVRPVSVAFEVVSDFRFYKKGVYTSDTCGSKPMDVNHAVLAVGYGVEDGVPYWIIKNSWGDNWGDNGYFKMELGKNMCGVATCASYPVVA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0586 334 SMART Inhibitor_I29_2 39 91 IPR013201 -
Ssu6g0586 334 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 296 315 IPR025661 -
Ssu6g0586 334 Pfam Cathepsin propeptide inhibitor domain (I29) 41 91 IPR013201 -
Ssu6g0586 334 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 135 146 IPR000169 -
Ssu6g0586 334 SMART pept_c1 117 332 IPR000668 GO:0006508|GO:0008234
Ssu6g0586 334 CDD Peptidase_C1A 118 331 IPR039417 -
Ssu6g0586 334 Gene3D Cysteine proteinases 37 333 - -
Ssu6g0586 334 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 40 331 - -
Ssu6g0586 334 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 279 289 IPR025660 -
Ssu6g0586 334 Pfam Papain family cysteine protease 117 332 IPR000668 GO:0006508|GO:0008234
Ssu6g0586 334 PRINTS Papain cysteine protease (C1) family signature 296 302 IPR000668 GO:0006508|GO:0008234
Ssu6g0586 334 PRINTS Papain cysteine protease (C1) family signature 135 150 IPR000668 GO:0006508|GO:0008234
Ssu6g0586 334 PRINTS Papain cysteine protease (C1) family signature 281 291 IPR000668 GO:0006508|GO:0008234
Ssu6g0586 334 SUPERFAMILY Cysteine proteinases 40 332 IPR038765 -
Ssu6g0586 334 PANTHER THIOL PROTEASE ALEURAIN 40 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0586 Ssu-Chr6 9184701 9187917 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0586 K01366 - gmx:100787165 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0586 6 9184701 9187917 Ssu6g0586 6 9184701 9187917 ECH
Ssu6g0586 6 9184701 9187917 Ssu1g1598 1 37906767 37912573 PCT